Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-520P-201ENST00000384717 104 ntBASIC0.8□□□□□ -2.28
USP3Q9Y6I4 MIR1255B2-201ENST00000408618 67 ntBASIC0.8□□□□□ -2.28
USP3Q9Y6I4 RNU6-175P-201ENST00000516896 107 ntBASIC0.8□□□□□ -2.28
USP3Q9Y6I4 AC022709.1-201ENST00000615967 87 ntBASIC0.8□□□□□ -2.28
USP3Q9Y6I4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
USP3Q9Y6I4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.79□□□□□ -2.28
USP3Q9Y6I4 RNU6-945P-201ENST00000383947 107 ntBASIC0.78□□□□□ -2.28
USP3Q9Y6I4 SNORA49-201ENST00000386157 136 ntBASIC0.78□□□□□ -2.28
USP3Q9Y6I4 RNU7-119P-201ENST00000459279 63 ntBASIC0.77□□□□□ -2.29
USP3Q9Y6I4 MIR429-201ENST00000362106 83 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 SNORD115-25-201ENST00000362619 82 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 Y_RNA.325-201ENST00000365171 122 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 MIR106A-201ENST00000384870 81 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 MIRLET7B-201ENST00000385140 83 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 RNU6-337P-201ENST00000391243 106 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 AC090617.8-201ENST00000623339 167 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 MIR6866-201ENST00000638146 69 ntBASIC0.76□□□□□ -2.29
USP3Q9Y6I4 SNORD44.1-201ENST00000363202 61 ntBASIC0.75□□□□□ -2.29
USP3Q9Y6I4 RNU6-1036P-201ENST00000383959 104 ntBASIC0.75□□□□□ -2.29
USP3Q9Y6I4 MIR519A2-201ENST00000384990 87 ntBASIC0.75□□□□□ -2.29
USP3Q9Y6I4 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
USP3Q9Y6I4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.75□□□□□ -2.29
USP3Q9Y6I4 MIR6835-201ENST00000621552 64 ntBASIC0.75□□□□□ -2.29
USP3Q9Y6I4 SNORA9.1-201ENST00000362412 131 ntBASIC0.74□□□□□ -2.29
USP3Q9Y6I4 SNORD116-16-201ENST00000384533 92 ntBASIC0.74□□□□□ -2.29
USP3Q9Y6I4 RNA5SP121-201ENST00000516537 101 ntBASIC0.74□□□□□ -2.29
USP3Q9Y6I4 RNU6-502P-201ENST00000362419 108 ntBASIC0.73□□□□□ -2.29
USP3Q9Y6I4 Y_RNA.540-201ENST00000384638 111 ntBASIC0.73□□□□□ -2.29
USP3Q9Y6I4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.73□□□□□ -2.29
USP3Q9Y6I4 RNU7-129P-201ENST00000516128 62 ntBASIC0.73□□□□□ -2.29
USP3Q9Y6I4 MIR5000-201ENST00000577717 103 ntBASIC0.73□□□□□ -2.29
USP3Q9Y6I4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.72□□□□□ -2.29
USP3Q9Y6I4 RNU6-446P-201ENST00000362827 106 ntBASIC0.72□□□□□ -2.29
USP3Q9Y6I4 MIR527-201ENST00000385244 85 ntBASIC0.71□□□□□ -2.3
USP3Q9Y6I4 MIR4714-201ENST00000580728 77 ntBASIC0.71□□□□□ -2.3
USP3Q9Y6I4 MIR3925-201ENST00000584674 77 ntBASIC0.71□□□□□ -2.3
USP3Q9Y6I4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
USP3Q9Y6I4 SNORA41B-201ENST00000384785 128 ntBASIC0.7□□□□□ -2.3
USP3Q9Y6I4 RN7SL660P-201ENST00000614852 299 ntBASIC0.7□□□□□ -2.3
USP3Q9Y6I4 uc_338.17-201ENST00000619633 179 ntBASIC0.7□□□□□ -2.3
USP3Q9Y6I4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.7□□□□□ -2.3
USP3Q9Y6I4 MIR508-201ENST00000384857 115 ntBASIC0.69□□□□□ -2.3
USP3Q9Y6I4 RNU6-782P-201ENST00000516852 104 ntBASIC0.69□□□□□ -2.3
USP3Q9Y6I4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.69□□□□□ -2.3
USP3Q9Y6I4 MIR499B-201ENST00000636498 73 ntBASIC0.69□□□□□ -2.3
USP3Q9Y6I4 Y_RNA.282-201ENST00000364793 102 ntBASIC0.68□□□□□ -2.3
USP3Q9Y6I4 MIR216A-201ENST00000385063 110 ntBASIC0.68□□□□□ -2.3
USP3Q9Y6I4 RNU6-1246P-201ENST00000391064 107 ntBASIC0.68□□□□□ -2.3
USP3Q9Y6I4 PVT1_3.1-201ENST00000620853 95 ntBASIC0.68□□□□□ -2.3
USP3Q9Y6I4 RNA5SP98-201ENST00000363158 137 ntBASIC0.67□□□□□ -2.3
USP3Q9Y6I4 RN7SL793P-201ENST00000583259 296 ntBASIC0.67□□□□□ -2.3
USP3Q9Y6I4 RNU6-808P-201ENST00000391233 108 ntBASIC0.66□□□□□ -2.3
USP3Q9Y6I4 MIR6779-201ENST00000617283 64 ntBASIC0.66□□□□□ -2.3
USP3Q9Y6I4 MIRLET7D-201ENST00000362263 87 ntBASIC0.65□□□□□ -2.31
USP3Q9Y6I4 RNU6-246P-201ENST00000384702 107 ntBASIC0.65□□□□□ -2.31
USP3Q9Y6I4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.65□□□□□ -2.31
USP3Q9Y6I4 RNU6-231P-201ENST00000517122 103 ntBASIC0.65□□□□□ -2.31
USP3Q9Y6I4 AC108740.1-201ENST00000498629 225 ntBASIC0.64□□□□□ -2.31
USP3Q9Y6I4 SNORA68.3-201ENST00000515906 83 ntBASIC0.64□□□□□ -2.31
USP3Q9Y6I4 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.64□□□□□ -2.31
USP3Q9Y6I4 Y_RNA.722-201ENST00000517279 114 ntBASIC0.64□□□□□ -2.31
USP3Q9Y6I4 AC090625.1-201ENST00000357130 210 ntBASIC0.63□□□□□ -2.31
USP3Q9Y6I4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.62□□□□□ -2.31
USP3Q9Y6I4 SNORD115-23-201ENST00000364461 82 ntBASIC0.61□□□□□ -2.31
USP3Q9Y6I4 RNU6-127P-201ENST00000390897 107 ntBASIC0.61□□□□□ -2.31
USP3Q9Y6I4 MIR892B-201ENST00000401279 77 ntBASIC0.61□□□□□ -2.31
USP3Q9Y6I4 RNA5SP436-201ENST00000516020 115 ntBASIC0.61□□□□□ -2.31
USP3Q9Y6I4 RNA5SP499-201ENST00000363982 119 ntBASIC0.6□□□□□ -2.31
USP3Q9Y6I4 MIR193B-201ENST00000384907 83 ntBASIC0.6□□□□□ -2.31
USP3Q9Y6I4 AP000676.1-201ENST00000533307 52 ntBASIC0.6□□□□□ -2.31
USP3Q9Y6I4 snoR1.1-201ENST00000628177 80 ntBASIC0.6□□□□□ -2.31
USP3Q9Y6I4 MIR103A1-201ENST00000362165 78 ntBASIC0.59□□□□□ -2.31
USP3Q9Y6I4 MIR1273G-201ENST00000577677 100 ntBASIC0.59□□□□□ -2.31
USP3Q9Y6I4 AL353803.5-201ENST00000599815 141 ntBASIC0.59□□□□□ -2.31
USP3Q9Y6I4 MIR7110-201ENST00000612638 86 ntBASIC0.59□□□□□ -2.31
USP3Q9Y6I4 RNA5SP62-201ENST00000363457 110 ntBASIC0.58□□□□□ -2.32
USP3Q9Y6I4 RNA5SP325-201ENST00000363756 130 ntBASIC0.58□□□□□ -2.32
USP3Q9Y6I4 MIR6513-201ENST00000621188 64 ntBASIC0.58□□□□□ -2.32
USP3Q9Y6I4 SNORD113-4-201ENST00000364802 75 ntBASIC0.57□□□□□ -2.32
USP3Q9Y6I4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.57□□□□□ -2.32
USP3Q9Y6I4 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
USP3Q9Y6I4 AC069113.3-201ENST00000521019 150 ntBASIC0.57□□□□□ -2.32
USP3Q9Y6I4 AC010487.4-201ENST00000637027 61 ntBASIC0.57□□□□□ -2.32
USP3Q9Y6I4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.57□□□□□ -2.32
USP3Q9Y6I4 MIR148A-201ENST00000362215 68 ntBASIC0.56□□□□□ -2.32
USP3Q9Y6I4 SNORD114-23-201ENST00000363536 72 ntBASIC0.56□□□□□ -2.32
USP3Q9Y6I4 RNU6-458P-201ENST00000384179 107 ntBASIC0.56□□□□□ -2.32
USP3Q9Y6I4 CR383656.4-201ENST00000546909 122 ntBASIC0.56□□□□□ -2.32
USP3Q9Y6I4 U6.58-201ENST00000613107 107 ntBASIC0.56□□□□□ -2.32
USP3Q9Y6I4 RNA5SP347-201ENST00000362445 119 ntBASIC0.55□□□□□ -2.32
USP3Q9Y6I4 RNU6-815P-201ENST00000384080 113 ntBASIC0.55□□□□□ -2.32
USP3Q9Y6I4 MIR4432-201ENST00000581823 84 ntBASIC0.55□□□□□ -2.32
USP3Q9Y6I4 MIR4743-201ENST00000584576 69 ntBASIC0.55□□□□□ -2.32
USP3Q9Y6I4 MIR924-201ENST00000638017 53 ntBASIC0.55□□□□□ -2.32
USP3Q9Y6I4 SNORA62.4-201ENST00000365504 151 ntBASIC0.54□□□□□ -2.32
USP3Q9Y6I4 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
USP3Q9Y6I4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.32
USP3Q9Y6I4 RNA5SP457-201ENST00000363657 124 ntBASIC0.53□□□□□ -2.32
USP3Q9Y6I4 RNU6-1184P-201ENST00000384588 108 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 203.7 ms