Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.23□□□□□ -2.37
NR2E3Q9Y5X4 SNORD115-22-201ENST00000364456 82 ntBASIC0.22□□□□□ -2.37
NR2E3Q9Y5X4 MIR106A-201ENST00000384870 81 ntBASIC0.22□□□□□ -2.37
NR2E3Q9Y5X4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
NR2E3Q9Y5X4 SNORA75.1-201ENST00000391130 148 ntBASIC0.22□□□□□ -2.37
NR2E3Q9Y5X4 RNU6-70P-201ENST00000516438 60 ntBASIC0.22□□□□□ -2.37
NR2E3Q9Y5X4 MIR6739-201ENST00000622461 75 ntBASIC0.22□□□□□ -2.37
NR2E3Q9Y5X4 RNU6-1241P-201ENST00000384536 107 ntBASIC0.21□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-604P-201ENST00000390917 100 ntBASIC0.21□□□□□ -2.38
NR2E3Q9Y5X4 SNORD45.1-201ENST00000363181 77 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 RNA5SP368-201ENST00000364298 116 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-776P-201ENST00000364403 104 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-1022P-201ENST00000365049 104 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 AC021146.9-201ENST00000512503 156 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-1015P-201ENST00000517121 99 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 IGLVI-20-201ENST00000519296 130 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 AC104408.1-201ENST00000605241 170 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 MIR371B-201ENST00000638082 66 ntBASIC0.2□□□□□ -2.38
NR2E3Q9Y5X4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.19□□□□□ -2.38
NR2E3Q9Y5X4 SNORD114-9-201ENST00000364370 72 ntBASIC0.19□□□□□ -2.38
NR2E3Q9Y5X4 Y_RNA.250-201ENST00000364542 110 ntBASIC0.19□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-180P-201ENST00000516697 61 ntBASIC0.19□□□□□ -2.38
NR2E3Q9Y5X4 RNA5SP214-201ENST00000363378 118 ntBASIC0.18□□□□□ -2.38
NR2E3Q9Y5X4 SNORD115-31-201ENST00000365318 82 ntBASIC0.18□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-1036P-201ENST00000383959 104 ntBASIC0.18□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-587P-201ENST00000391282 106 ntBASIC0.18□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-656P-201ENST00000516785 107 ntBASIC0.18□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-411P-201ENST00000384451 107 ntBASIC0.17□□□□□ -2.38
NR2E3Q9Y5X4 RNU6-982P-201ENST00000516216 102 ntBASIC0.17□□□□□ -2.38
NR2E3Q9Y5X4 SNORA33.1-201ENST00000364957 130 ntBASIC0.16□□□□□ -2.38
NR2E3Q9Y5X4 SNORD45A-201ENST00000384512 84 ntBASIC0.16□□□□□ -2.38
NR2E3Q9Y5X4 MIR521-2-201ENST00000384818 87 ntBASIC0.16□□□□□ -2.38
NR2E3Q9Y5X4 MIR892B-201ENST00000401279 77 ntBASIC0.16□□□□□ -2.38
NR2E3Q9Y5X4 MIR4743-201ENST00000584576 69 ntBASIC0.16□□□□□ -2.38
NR2E3Q9Y5X4 AC090617.8-201ENST00000623339 167 ntBASIC0.16□□□□□ -2.38
NR2E3Q9Y5X4 MIR4662A-201ENST00000637499 67 ntBASIC0.16□□□□□ -2.38
NR2E3Q9Y5X4 SNORD114-31-201ENST00000363219 75 ntBASIC0.15□□□□□ -2.39
NR2E3Q9Y5X4 MIR145-201ENST00000384967 88 ntBASIC0.15□□□□□ -2.39
NR2E3Q9Y5X4 MIR610-201ENST00000385139 96 ntBASIC0.15□□□□□ -2.39
NR2E3Q9Y5X4 RNU6-337P-201ENST00000391243 106 ntBASIC0.15□□□□□ -2.39
NR2E3Q9Y5X4 MIR1295A-201ENST00000408463 79 ntBASIC0.15□□□□□ -2.39
NR2E3Q9Y5X4 RNU6-881P-201ENST00000516813 102 ntBASIC0.15□□□□□ -2.39
NR2E3Q9Y5X4 RNU6-645P-201ENST00000364649 106 ntBASIC0.14□□□□□ -2.39
NR2E3Q9Y5X4 MIR593-201ENST00000384856 100 ntBASIC0.14□□□□□ -2.39
NR2E3Q9Y5X4 RNA5SP163-201ENST00000410304 99 ntBASIC0.14□□□□□ -2.39
NR2E3Q9Y5X4 MIR6514-201ENST00000622549 70 ntBASIC0.14□□□□□ -2.39
NR2E3Q9Y5X4 RNU6-502P-201ENST00000362419 108 ntBASIC0.13□□□□□ -2.39
NR2E3Q9Y5X4 SNORD113.1-201ENST00000363280 73 ntBASIC0.13□□□□□ -2.39
NR2E3Q9Y5X4 RNU7-165P-201ENST00000458864 60 ntBASIC0.13□□□□□ -2.39
NR2E3Q9Y5X4 CR383656.4-201ENST00000546909 122 ntBASIC0.13□□□□□ -2.39
NR2E3Q9Y5X4 MIR4493-201ENST00000584016 73 ntBASIC0.13□□□□□ -2.39
NR2E3Q9Y5X4 MIR8053-201ENST00000613344 75 ntBASIC0.13□□□□□ -2.39
NR2E3Q9Y5X4 SNORA15B-2-201ENST00000384058 135 ntBASIC0.12□□□□□ -2.39
NR2E3Q9Y5X4 SNORA15B-1-201ENST00000384334 135 ntBASIC0.12□□□□□ -2.39
NR2E3Q9Y5X4 RNU6-634P-201ENST00000459134 106 ntBASIC0.12□□□□□ -2.39
NR2E3Q9Y5X4 SNORD2-201ENST00000459163 69 ntBASIC0.12□□□□□ -2.39
NR2E3Q9Y5X4 RNA5SP67-201ENST00000516422 131 ntBASIC0.12□□□□□ -2.39
NR2E3Q9Y5X4 AP001180.6-201ENST00000584918 159 ntBASIC0.12□□□□□ -2.39
NR2E3Q9Y5X4 MIR6773-201ENST00000612812 74 ntBASIC0.12□□□□□ -2.39
NR2E3Q9Y5X4 MIR6507-201ENST00000613630 70 ntBASIC0.12□□□□□ -2.39
NR2E3Q9Y5X4 SNORD114-5-201ENST00000362928 70 ntBASIC0.11□□□□□ -2.39
NR2E3Q9Y5X4 SNORD116-24-201ENST00000384549 92 ntBASIC0.11□□□□□ -2.39
NR2E3Q9Y5X4 Y_RNA.565-201ENST00000384719 101 ntBASIC0.11□□□□□ -2.39
NR2E3Q9Y5X4 MIR604-201ENST00000384880 94 ntBASIC0.11□□□□□ -2.39
NR2E3Q9Y5X4 MIR154-201ENST00000385243 84 ntBASIC0.11□□□□□ -2.39
NR2E3Q9Y5X4 MIR148A-201ENST00000362215 68 ntBASIC0.1□□□□□ -2.39
NR2E3Q9Y5X4 SNORD115-25-201ENST00000362619 82 ntBASIC0.1□□□□□ -2.39
NR2E3Q9Y5X4 RNU6-540P-201ENST00000384622 101 ntBASIC0.1□□□□□ -2.39
NR2E3Q9Y5X4 Y_RNA.545-201ENST00000384652 105 ntBASIC0.1□□□□□ -2.39
NR2E3Q9Y5X4 RNU6-1296P-201ENST00000383879 107 ntBASIC0.09□□□□□ -2.4
NR2E3Q9Y5X4 RNU6-1162P-201ENST00000384443 104 ntBASIC0.09□□□□□ -2.4
NR2E3Q9Y5X4 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.09□□□□□ -2.4
NR2E3Q9Y5X4 MIR409-201ENST00000362237 79 ntBASIC0.08□□□□□ -2.4
NR2E3Q9Y5X4 MIR4290-201ENST00000583807 95 ntBASIC0.08□□□□□ -2.4
NR2E3Q9Y5X4 AC108676.2-201ENST00000605225 163 ntBASIC0.08□□□□□ -2.4
NR2E3Q9Y5X4 MIRLET7B-201ENST00000385140 83 ntBASIC0.07□□□□□ -2.4
NR2E3Q9Y5X4 U6.96-201ENST00000636425 70 ntBASIC0.07□□□□□ -2.4
NR2E3Q9Y5X4 MIR655-201ENST00000362159 97 ntBASIC0.06□□□□□ -2.4
NR2E3Q9Y5X4 AP000676.1-201ENST00000533307 52 ntBASIC0.06□□□□□ -2.4
NR2E3Q9Y5X4 AC244250.2-201ENST00000418731 148 ntBASIC0.05□□□□□ -2.4
NR2E3Q9Y5X4 RNU7-159P-201ENST00000459284 62 ntBASIC0.05□□□□□ -2.4
NR2E3Q9Y5X4 CYP3A54P-201ENST00000566950 75 ntBASIC0.05□□□□□ -2.4
NR2E3Q9Y5X4 MIR4667-201ENST00000578933 66 ntBASIC0.05□□□□□ -2.4
NR2E3Q9Y5X4 RNU6-302P-201ENST00000365249 107 ntBASIC0.04□□□□□ -2.4
NR2E3Q9Y5X4 RNU6-929P-201ENST00000384429 107 ntBASIC0.04□□□□□ -2.4
NR2E3Q9Y5X4 MIR9-2-201ENST00000384838 87 ntBASIC0.04□□□□□ -2.4
NR2E3Q9Y5X4 U2.7-201ENST00000619197 100 ntBASIC0.04□□□□□ -2.4
NR2E3Q9Y5X4 RNU6-1216P-201ENST00000362590 107 ntBASIC0.03□□□□□ -2.4
NR2E3Q9Y5X4 SNORD114-16-201ENST00000363044 70 ntBASIC0.02□□□□□ -2.41
NR2E3Q9Y5X4 SNORD115-23-201ENST00000364461 82 ntBASIC0.02□□□□□ -2.41
NR2E3Q9Y5X4 RNU7-55P-201ENST00000459426 62 ntBASIC0.02□□□□□ -2.41
NR2E3Q9Y5X4 RNU6-1089P-201ENST00000516473 104 ntBASIC0.01□□□□□ -2.41
NR2E3Q9Y5X4 MIR1255B2-201ENST00000408618 67 ntBASIC0□□□□□ -2.41
NR2E3Q9Y5X4 Y_RNA.610-201ENST00000410681 103 ntBASIC0□□□□□ -2.41
NR2E3Q9Y5X4 SNORD95.1-201ENST00000364099 68 ntBASIC-0.01□□□□□ -2.41
NR2E3Q9Y5X4 RNU6-895P-201ENST00000384125 103 ntBASIC-0.01□□□□□ -2.41
NR2E3Q9Y5X4 RNU6-900P-201ENST00000384498 102 ntBASIC-0.01□□□□□ -2.41
NR2E3Q9Y5X4 RNA5SP266-201ENST00000410273 108 ntBASIC-0.01□□□□□ -2.41
NR2E3Q9Y5X4 RNU6-46P-201ENST00000383860 107 ntBASIC-0.02□□□□□ -2.41
NR2E3Q9Y5X4 RNU6-455P-201ENST00000384681 107 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 160 ms