Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 HMGN2P38-201ENST00000423806 265 ntBASIC2.24□□□□□ -2.05
TRIM35Q9UPQ4 MIR548AL-201ENST00000578416 97 ntBASIC2.24□□□□□ -2.05
TRIM35Q9UPQ4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
TRIM35Q9UPQ4 RNU1-92P-201ENST00000517017 135 ntBASIC2.23□□□□□ -2.05
TRIM35Q9UPQ4 MIR4473-201ENST00000583731 91 ntBASIC2.23□□□□□ -2.05
TRIM35Q9UPQ4 MIR6840-201ENST00000611937 71 ntBASIC2.23□□□□□ -2.05
TRIM35Q9UPQ4 MIR429-201ENST00000362106 83 ntBASIC2.22□□□□□ -2.05
TRIM35Q9UPQ4 Y_RNA.109-201ENST00000363215 102 ntBASIC2.22□□□□□ -2.05
TRIM35Q9UPQ4 MIR4524B-201ENST00000581569 115 ntBASIC2.22□□□□□ -2.05
TRIM35Q9UPQ4 MIR4769-201ENST00000584126 77 ntBASIC2.22□□□□□ -2.05
TRIM35Q9UPQ4 AC243829.6-201ENST00000612652 106 ntBASIC2.22□□□□□ -2.05
TRIM35Q9UPQ4 RNU1-17P-201ENST00000363022 152 ntBASIC2.21□□□□□ -2.06
TRIM35Q9UPQ4 SNORA17.3-201ENST00000391159 129 ntBASIC2.21□□□□□ -2.06
TRIM35Q9UPQ4 RNU1-78P-201ENST00000391248 165 ntBASIC2.21□□□□□ -2.06
TRIM35Q9UPQ4 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.21□□□□□ -2.06
TRIM35Q9UPQ4 U7.7-201ENST00000459276 60 ntBASIC2.21□□□□□ -2.06
TRIM35Q9UPQ4 MIR3678-201ENST00000578455 94 ntBASIC2.21□□□□□ -2.06
TRIM35Q9UPQ4 MIR4448-201ENST00000584360 86 ntBASIC2.21□□□□□ -2.06
TRIM35Q9UPQ4 MIR3198-2-201ENST00000577868 80 ntBASIC2.2□□□□□ -2.06
TRIM35Q9UPQ4 AC012493.3-201ENST00000604494 112 ntBASIC2.2□□□□□ -2.06
TRIM35Q9UPQ4 RNA5SP190-201ENST00000365222 118 ntBASIC2.19□□□□□ -2.06
TRIM35Q9UPQ4 AC006210.1-201ENST00000424882 111 ntBASIC2.19□□□□□ -2.06
TRIM35Q9UPQ4 SNORD13-201ENST00000459299 104 ntBASIC2.19□□□□□ -2.06
TRIM35Q9UPQ4 RNU6-1206P-201ENST00000516339 103 ntBASIC2.19□□□□□ -2.06
TRIM35Q9UPQ4 RNU7-160P-201ENST00000516660 62 ntBASIC2.19□□□□□ -2.06
TRIM35Q9UPQ4 RNA5SP364-201ENST00000516938 78 ntBASIC2.19□□□□□ -2.06
TRIM35Q9UPQ4 MIR548AG1-201ENST00000579932 66 ntBASIC2.19□□□□□ -2.06
TRIM35Q9UPQ4 SNORD12-201ENST00000391002 90 ntBASIC2.18□□□□□ -2.06
TRIM35Q9UPQ4 MIR4422-201ENST00000581938 83 ntBASIC2.18□□□□□ -2.06
TRIM35Q9UPQ4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC2.18□□□□□ -2.06
TRIM35Q9UPQ4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
TRIM35Q9UPQ4 RNA5SP99-201ENST00000364020 114 ntBASIC2.17□□□□□ -2.06
TRIM35Q9UPQ4 RNU7-154P-201ENST00000516194 62 ntBASIC2.17□□□□□ -2.06
TRIM35Q9UPQ4 SNORA25.15-201ENST00000516487 89 ntBASIC2.17□□□□□ -2.06
TRIM35Q9UPQ4 SNORA70.22-201ENST00000517160 124 ntBASIC2.17□□□□□ -2.06
TRIM35Q9UPQ4 SNORD105-201ENST00000386910 85 ntBASIC2.16□□□□□ -2.06
TRIM35Q9UPQ4 SNORD110-201ENST00000408189 75 ntBASIC2.16□□□□□ -2.06
TRIM35Q9UPQ4 RNU6-1110P-201ENST00000516462 101 ntBASIC2.16□□□□□ -2.06
TRIM35Q9UPQ4 MIR6828-201ENST00000636181 60 ntBASIC2.16□□□□□ -2.06
TRIM35Q9UPQ4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
TRIM35Q9UPQ4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
TRIM35Q9UPQ4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
TRIM35Q9UPQ4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC2.15□□□□□ -2.07
TRIM35Q9UPQ4 uc_338.20-201ENST00000621563 178 ntBASIC2.14□□□□□ -2.07
TRIM35Q9UPQ4 U6.103-201ENST00000637085 61 ntBASIC2.14□□□□□ -2.07
TRIM35Q9UPQ4 RNU6-458P-201ENST00000384179 107 ntBASIC2.13□□□□□ -2.07
TRIM35Q9UPQ4 MIR17-201ENST00000385012 84 ntBASIC2.13□□□□□ -2.07
TRIM35Q9UPQ4 SNORD89-201ENST00000390981 114 ntBASIC2.13□□□□□ -2.07
TRIM35Q9UPQ4 U6.58-201ENST00000613107 107 ntBASIC2.13□□□□□ -2.07
TRIM35Q9UPQ4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
TRIM35Q9UPQ4 Y_RNA.69-201ENST00000362885 109 ntBASIC2.12□□□□□ -2.07
TRIM35Q9UPQ4 MIR579-201ENST00000385221 98 ntBASIC2.12□□□□□ -2.07
TRIM35Q9UPQ4 SNORD115-25-201ENST00000362619 82 ntBASIC2.11□□□□□ -2.07
TRIM35Q9UPQ4 Y_RNA.676-201ENST00000516393 96 ntBASIC2.11□□□□□ -2.07
TRIM35Q9UPQ4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.11□□□□□ -2.07
TRIM35Q9UPQ4 MIR4303-201ENST00000581299 66 ntBASIC2.11□□□□□ -2.07
TRIM35Q9UPQ4 MIR502-201ENST00000606349 86 ntBASIC2.11□□□□□ -2.07
TRIM35Q9UPQ4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
TRIM35Q9UPQ4 AL356379.1-201ENST00000414105 126 ntBASIC2.1□□□□□ -2.07
TRIM35Q9UPQ4 AC002429.1-201ENST00000437672 148 ntBASIC2.1□□□□□ -2.07
TRIM35Q9UPQ4 RNA5SP227-201ENST00000516184 113 ntBASIC2.1□□□□□ -2.07
TRIM35Q9UPQ4 MIR3612-201ENST00000579753 87 ntBASIC2.1□□□□□ -2.07
TRIM35Q9UPQ4 RNU6-1204P-201ENST00000363948 107 ntBASIC2.09□□□□□ -2.07
TRIM35Q9UPQ4 MIR573-201ENST00000384964 99 ntBASIC2.09□□□□□ -2.07
TRIM35Q9UPQ4 AC244090.1-201ENST00000441884 93 ntBASIC2.09□□□□□ -2.07
TRIM35Q9UPQ4 AL353997.5-201ENST00000618886 171 ntBASIC2.09□□□□□ -2.07
TRIM35Q9UPQ4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
TRIM35Q9UPQ4 RNA5SP470-201ENST00000516463 106 ntBASIC2.08□□□□□ -2.08
TRIM35Q9UPQ4 RNU7-151P-201ENST00000516930 53 ntBASIC2.08□□□□□ -2.08
TRIM35Q9UPQ4 MIR1323-201ENST00000408090 73 ntBASIC2.07□□□□□ -2.08
TRIM35Q9UPQ4 AC025627.3-201ENST00000582078 182 ntBASIC2.07□□□□□ -2.08
TRIM35Q9UPQ4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
TRIM35Q9UPQ4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC2.06□□□□□ -2.08
TRIM35Q9UPQ4 MIR20A-201ENST00000362279 71 ntBASIC2.06□□□□□ -2.08
TRIM35Q9UPQ4 MIR222-201ENST00000384992 110 ntBASIC2.06□□□□□ -2.08
TRIM35Q9UPQ4 MIR329-2-201ENST00000385029 84 ntBASIC2.06□□□□□ -2.08
TRIM35Q9UPQ4 RNU6-337P-201ENST00000391243 106 ntBASIC2.06□□□□□ -2.08
TRIM35Q9UPQ4 SNORD2-201ENST00000459163 69 ntBASIC2.06□□□□□ -2.08
TRIM35Q9UPQ4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC2.06□□□□□ -2.08
TRIM35Q9UPQ4 FABP5P4-201ENST00000437203 171 ntBASIC2.05□□□□□ -2.08
TRIM35Q9UPQ4 AL451105.1-201ENST00000450005 189 ntBASIC2.05□□□□□ -2.08
TRIM35Q9UPQ4 AC008834.1-201ENST00000511612 175 ntBASIC2.05□□□□□ -2.08
TRIM35Q9UPQ4 RNU6-822P-201ENST00000362707 106 ntBASIC2.04□□□□□ -2.08
TRIM35Q9UPQ4 RNU6-598P-201ENST00000364017 105 ntBASIC2.04□□□□□ -2.08
TRIM35Q9UPQ4 RNU6-482P-201ENST00000391068 107 ntBASIC2.04□□□□□ -2.08
TRIM35Q9UPQ4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
TRIM35Q9UPQ4 RNU6-828P-201ENST00000364876 107 ntBASIC2.03□□□□□ -2.08
TRIM35Q9UPQ4 AC108667.1-201ENST00000428618 249 ntBASIC2.03□□□□□ -2.08
TRIM35Q9UPQ4 MIR6773-201ENST00000612812 74 ntBASIC2.03□□□□□ -2.08
TRIM35Q9UPQ4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
TRIM35Q9UPQ4 RNU4-62P-201ENST00000410125 130 ntBASIC2.02□□□□□ -2.09
TRIM35Q9UPQ4 RNA5SP247-201ENST00000411181 105 ntBASIC2.02□□□□□ -2.09
TRIM35Q9UPQ4 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.02□□□□□ -2.09
TRIM35Q9UPQ4 U2.18-201ENST00000622185 84 ntBASIC2.02□□□□□ -2.09
TRIM35Q9UPQ4 SNORA67.5-201ENST00000391036 107 ntBASIC2.01□□□□□ -2.09
TRIM35Q9UPQ4 AL603825.1-201ENST00000438481 80 ntBASIC2.01□□□□□ -2.09
TRIM35Q9UPQ4 RNA5SP233-201ENST00000459153 113 ntBASIC2.01□□□□□ -2.09
TRIM35Q9UPQ4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
TRIM35Q9UPQ4 RNU1-42P-201ENST00000364033 160 ntBASIC2□□□□□ -2.09
TRIM35Q9UPQ4 RNA5SP363-201ENST00000365072 115 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 232.7 ms