Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.37□□□□□ -2.63
CCDC43Q96MW1 RNU6-592P-201ENST00000411333 103 ntBASIC-1.37□□□□□ -2.63
CCDC43Q96MW1 MIR378F-201ENST00000578143 78 ntBASIC-1.37□□□□□ -2.63
CCDC43Q96MW1 MIR3140-201ENST00000583685 90 ntBASIC-1.37□□□□□ -2.63
CCDC43Q96MW1 MIR6773-201ENST00000612812 74 ntBASIC-1.37□□□□□ -2.63
CCDC43Q96MW1 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.38□□□□□ -2.63
CCDC43Q96MW1 MIR517B-201ENST00000385102 67 ntBASIC-1.38□□□□□ -2.63
CCDC43Q96MW1 AP000533.3-201ENST00000447704 118 ntBASIC-1.38□□□□□ -2.63
CCDC43Q96MW1 RNA5SP470-201ENST00000516463 106 ntBASIC-1.38□□□□□ -2.63
CCDC43Q96MW1 MIR3613-201ENST00000579844 87 ntBASIC-1.38□□□□□ -2.63
CCDC43Q96MW1 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.39□□□□□ -2.63
CCDC43Q96MW1 MIR601-201ENST00000385256 79 ntBASIC-1.39□□□□□ -2.63
CCDC43Q96MW1 MIR1468-201ENST00000410600 86 ntBASIC-1.39□□□□□ -2.63
CCDC43Q96MW1 MIR3115-201ENST00000577915 68 ntBASIC-1.39□□□□□ -2.63
CCDC43Q96MW1 AL035470.1-201ENST00000622571 220 ntBASIC-1.39□□□□□ -2.63
CCDC43Q96MW1 RNU6-24P-201ENST00000384440 107 ntBASIC-1.4□□□□□ -2.63
CCDC43Q96MW1 RNA5SP461-201ENST00000516451 104 ntBASIC-1.4□□□□□ -2.63
CCDC43Q96MW1 SNORA63.2-201ENST00000362603 126 ntBASIC-1.41□□□□□ -2.64
CCDC43Q96MW1 RNY3P2-201ENST00000362918 102 ntBASIC-1.41□□□□□ -2.64
CCDC43Q96MW1 SNORD115-23-201ENST00000364461 82 ntBASIC-1.41□□□□□ -2.64
CCDC43Q96MW1 MIRLET7B-201ENST00000385140 83 ntBASIC-1.41□□□□□ -2.64
CCDC43Q96MW1 RNU6-426P-201ENST00000516464 97 ntBASIC-1.41□□□□□ -2.64
CCDC43Q96MW1 RNU6-495P-201ENST00000362995 107 ntBASIC-1.42□□□□□ -2.64
CCDC43Q96MW1 SNORD114-25-201ENST00000363742 72 ntBASIC-1.42□□□□□ -2.64
CCDC43Q96MW1 SNORA63.6-201ENST00000364921 119 ntBASIC-1.42□□□□□ -2.64
CCDC43Q96MW1 RNU6-337P-201ENST00000391243 106 ntBASIC-1.42□□□□□ -2.64
CCDC43Q96MW1 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.42□□□□□ -2.64
CCDC43Q96MW1 MTND5P41-201ENST00000517498 206 ntBASIC-1.42□□□□□ -2.64
CCDC43Q96MW1 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.43□□□□□ -2.64
CCDC43Q96MW1 RNU6-905P-201ENST00000384434 107 ntBASIC-1.43□□□□□ -2.64
CCDC43Q96MW1 MIR3064-201ENST00000581130 66 ntBASIC-1.43□□□□□ -2.64
CCDC43Q96MW1 MIR548U-201ENST00000390728 81 ntBASIC-1.44□□□□□ -2.64
CCDC43Q96MW1 AC068339.1-201ENST00000526965 141 ntBASIC-1.44□□□□□ -2.64
CCDC43Q96MW1 AC103810.7-201ENST00000607821 91 ntBASIC-1.44□□□□□ -2.64
CCDC43Q96MW1 RNU6-990P-201ENST00000364385 104 ntBASIC-1.45□□□□□ -2.64
CCDC43Q96MW1 MTND4LP9-201ENST00000427694 174 ntBASIC-1.45□□□□□ -2.64
CCDC43Q96MW1 RNU6-772P-201ENST00000516042 105 ntBASIC-1.45□□□□□ -2.64
CCDC43Q96MW1 MIR4679-2-201ENST00000578358 77 ntBASIC-1.45□□□□□ -2.64
CCDC43Q96MW1 AL157777.2-201ENST00000258070 137 ntBASIC-1.47□□□□□ -2.64
CCDC43Q96MW1 RNU6-274P-201ENST00000459566 107 ntBASIC-1.47□□□□□ -2.64
CCDC43Q96MW1 MIR4439-201ENST00000583746 80 ntBASIC-1.47□□□□□ -2.64
CCDC43Q96MW1 AC104996.3-201ENST00000590718 94 ntBASIC-1.47□□□□□ -2.64
CCDC43Q96MW1 MIR198-201ENST00000637333 62 ntBASIC-1.47□□□□□ -2.64
CCDC43Q96MW1 SNORD45B-201ENST00000364617 72 ntBASIC-1.48□□□□□ -2.65
CCDC43Q96MW1 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.48□□□□□ -2.65
CCDC43Q96MW1 MT-TG-201ENST00000387429 68 ntBASIC-1.48□□□□□ -2.65
CCDC43Q96MW1 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.48□□□□□ -2.65
CCDC43Q96MW1 RNU6-644P-201ENST00000391155 98 ntBASIC-1.48□□□□□ -2.65
CCDC43Q96MW1 SNORD4B-201ENST00000459083 72 ntBASIC-1.48□□□□□ -2.65
CCDC43Q96MW1 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.49□□□□□ -2.65
CCDC43Q96MW1 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.49□□□□□ -2.65
CCDC43Q96MW1 RNU6-813P-201ENST00000384691 107 ntBASIC-1.49□□□□□ -2.65
CCDC43Q96MW1 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.5□□□□□ -2.65
CCDC43Q96MW1 SNORA24B-201ENST00000384176 131 ntBASIC-1.5□□□□□ -2.65
CCDC43Q96MW1 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.5□□□□□ -2.65
CCDC43Q96MW1 MIR147A-201ENST00000385079 72 ntBASIC-1.5□□□□□ -2.65
CCDC43Q96MW1 AL500527.2-201ENST00000454105 95 ntBASIC-1.5□□□□□ -2.65
CCDC43Q96MW1 RNU6-182P-201ENST00000516970 105 ntBASIC-1.5□□□□□ -2.65
CCDC43Q96MW1 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.51□□□□□ -2.65
CCDC43Q96MW1 SNORD18.2-201ENST00000459604 70 ntBASIC-1.51□□□□□ -2.65
CCDC43Q96MW1 AC021146.9-201ENST00000512503 156 ntBASIC-1.51□□□□□ -2.65
CCDC43Q96MW1 MIR548Z-201ENST00000584743 97 ntBASIC-1.51□□□□□ -2.65
CCDC43Q96MW1 uc_338.19-201ENST00000616808 99 ntBASIC-1.51□□□□□ -2.65
CCDC43Q96MW1 U6.96-201ENST00000636425 70 ntBASIC-1.51□□□□□ -2.65
CCDC43Q96MW1 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 RNU6-431P-201ENST00000383874 107 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 RNU7-107P-201ENST00000459121 61 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 MIR5009-201ENST00000578736 100 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 MIR4499-201ENST00000584834 69 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 AL353621.2-201ENST00000605340 133 ntBASIC-1.52□□□□□ -2.65
CCDC43Q96MW1 RNA5SP292-201ENST00000390974 118 ntBASIC-1.53□□□□□ -2.65
CCDC43Q96MW1 RNU6-519P-201ENST00000410590 108 ntBASIC-1.53□□□□□ -2.65
CCDC43Q96MW1 YWHAEP3-201ENST00000582767 121 ntBASIC-1.53□□□□□ -2.65
CCDC43Q96MW1 SNORA62.4-201ENST00000365504 151 ntBASIC-1.54□□□□□ -2.66
CCDC43Q96MW1 MIR548A1-201ENST00000385041 97 ntBASIC-1.54□□□□□ -2.66
CCDC43Q96MW1 MIR124-2-201ENST00000385081 109 ntBASIC-1.54□□□□□ -2.66
CCDC43Q96MW1 SNORD64-201ENST00000386683 67 ntBASIC-1.54□□□□□ -2.66
CCDC43Q96MW1 SNORD90-201ENST00000391145 111 ntBASIC-1.54□□□□□ -2.66
CCDC43Q96MW1 SNORD75.2-201ENST00000408784 58 ntBASIC-1.54□□□□□ -2.66
CCDC43Q96MW1 SNORA40-201ENST00000388090 126 ntBASIC-1.55□□□□□ -2.66
CCDC43Q96MW1 RNU7-24P-201ENST00000458867 62 ntBASIC-1.55□□□□□ -2.66
CCDC43Q96MW1 MIR4723-201ENST00000585070 81 ntBASIC-1.55□□□□□ -2.66
CCDC43Q96MW1 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.56□□□□□ -2.66
CCDC43Q96MW1 RNU6-886P-201ENST00000384319 105 ntBASIC-1.56□□□□□ -2.66
CCDC43Q96MW1 MIR1285-2-201ENST00000408311 88 ntBASIC-1.56□□□□□ -2.66
CCDC43Q96MW1 AC090617.8-201ENST00000623339 167 ntBASIC-1.56□□□□□ -2.66
CCDC43Q96MW1 RNU6-208P-201ENST00000362431 107 ntBASIC-1.57□□□□□ -2.66
CCDC43Q96MW1 RNU6-257P-201ENST00000410238 98 ntBASIC-1.57□□□□□ -2.66
CCDC43Q96MW1 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.57□□□□□ -2.66
CCDC43Q96MW1 RNU6-795P-201ENST00000516323 103 ntBASIC-1.57□□□□□ -2.66
CCDC43Q96MW1 SNORA18.5-201ENST00000516616 101 ntBASIC-1.57□□□□□ -2.66
CCDC43Q96MW1 MIR4777-201ENST00000583710 86 ntBASIC-1.57□□□□□ -2.66
CCDC43Q96MW1 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.57□□□□□ -2.66
CCDC43Q96MW1 MIR365A-201ENST00000362260 87 ntBASIC-1.58□□□□□ -2.66
CCDC43Q96MW1 AC140658.3-201ENST00000567603 271 ntBASIC-1.58□□□□□ -2.66
CCDC43Q96MW1 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.58□□□□□ -2.66
CCDC43Q96MW1 RNU6-62P-201ENST00000516526 102 ntBASIC-1.59□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 298.6 ms