Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.08□□□□□ -2.42
PDLIM3Q53GG5 RNU6-589P-201ENST00000516485 107 ntBASIC-0.08□□□□□ -2.42
PDLIM3Q53GG5 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.08□□□□□ -2.42
PDLIM3Q53GG5 MIR198-201ENST00000637333 62 ntBASIC-0.08□□□□□ -2.42
PDLIM3Q53GG5 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.09□□□□□ -2.42
PDLIM3Q53GG5 MIR450A1-201ENST00000362262 91 ntBASIC-0.1□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.1□□□□□ -2.43
PDLIM3Q53GG5 SNORA32.1-201ENST00000364514 115 ntBASIC-0.1□□□□□ -2.43
PDLIM3Q53GG5 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.1□□□□□ -2.43
PDLIM3Q53GG5 RNU4-63P-201ENST00000411313 118 ntBASIC-0.1□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.1□□□□□ -2.43
PDLIM3Q53GG5 RN7SL660P-201ENST00000614852 299 ntBASIC-0.1□□□□□ -2.43
PDLIM3Q53GG5 RNU6-834P-201ENST00000362367 110 ntBASIC-0.11□□□□□ -2.43
PDLIM3Q53GG5 RNU4-32P-201ENST00000363404 141 ntBASIC-0.11□□□□□ -2.43
PDLIM3Q53GG5 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.11□□□□□ -2.43
PDLIM3Q53GG5 SNORD58A-201ENST00000383875 65 ntBASIC-0.11□□□□□ -2.43
PDLIM3Q53GG5 RNU6-972P-201ENST00000391208 107 ntBASIC-0.11□□□□□ -2.43
PDLIM3Q53GG5 RNU6-887P-201ENST00000410660 100 ntBASIC-0.11□□□□□ -2.43
PDLIM3Q53GG5 SNORD4B-201ENST00000459083 72 ntBASIC-0.11□□□□□ -2.43
PDLIM3Q53GG5 RNU6-789P-201ENST00000517105 102 ntBASIC-0.11□□□□□ -2.43
PDLIM3Q53GG5 RNU6-54P-201ENST00000365563 107 ntBASIC-0.12□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.12□□□□□ -2.43
PDLIM3Q53GG5 MIR548U-201ENST00000390728 81 ntBASIC-0.12□□□□□ -2.43
PDLIM3Q53GG5 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 RNU6-811P-201ENST00000384069 107 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 MIR652-201ENST00000385278 98 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 RNU7-165P-201ENST00000458864 60 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 AC026421.1-201ENST00000519101 163 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 MIR3064-201ENST00000581130 66 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 MIR3140-201ENST00000583685 90 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.13□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.273-201ENST00000364703 102 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 SNORD114-29-201ENST00000364819 70 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 RNA5SP292-201ENST00000390974 118 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 MIR876-201ENST00000401147 81 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 AL031737.1-201ENST00000450125 223 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 RNU6-537P-201ENST00000517277 103 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 AC104996.3-201ENST00000590718 94 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 MIR548O2-201ENST00000616090 70 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 U7.3-201ENST00000616123 62 ntBASIC-0.14□□□□□ -2.43
PDLIM3Q53GG5 RNU6-161P-201ENST00000363051 106 ntBASIC-0.15□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.15□□□□□ -2.43
PDLIM3Q53GG5 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.15□□□□□ -2.43
PDLIM3Q53GG5 MIR216B-201ENST00000390186 82 ntBASIC-0.15□□□□□ -2.43
PDLIM3Q53GG5 RNU6-180P-201ENST00000516697 61 ntBASIC-0.15□□□□□ -2.43
PDLIM3Q53GG5 MIR4743-201ENST00000584576 69 ntBASIC-0.15□□□□□ -2.43
PDLIM3Q53GG5 RNU6-766P-201ENST00000362478 107 ntBASIC-0.16□□□□□ -2.44
PDLIM3Q53GG5 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.16□□□□□ -2.44
PDLIM3Q53GG5 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.16□□□□□ -2.44
PDLIM3Q53GG5 SNORD114-12-201ENST00000365400 75 ntBASIC-0.16□□□□□ -2.44
PDLIM3Q53GG5 RNU6-1081P-201ENST00000384537 107 ntBASIC-0.16□□□□□ -2.44
PDLIM3Q53GG5 RNY4P18-201ENST00000391107 89 ntBASIC-0.16□□□□□ -2.44
PDLIM3Q53GG5 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.16□□□□□ -2.44
PDLIM3Q53GG5 SNORA63.4-201ENST00000362763 126 ntBASIC-0.17□□□□□ -2.44
PDLIM3Q53GG5 SNORD113-1-201ENST00000365321 69 ntBASIC-0.17□□□□□ -2.44
PDLIM3Q53GG5 CR383656.4-201ENST00000546909 122 ntBASIC-0.17□□□□□ -2.44
PDLIM3Q53GG5 MIR1295B-201ENST00000636144 60 ntBASIC-0.17□□□□□ -2.44
PDLIM3Q53GG5 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.18□□□□□ -2.44
PDLIM3Q53GG5 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.18□□□□□ -2.44
PDLIM3Q53GG5 SNORA18.5-201ENST00000516616 101 ntBASIC-0.18□□□□□ -2.44
PDLIM3Q53GG5 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.18□□□□□ -2.44
PDLIM3Q53GG5 SNORD116-10-201ENST00000363791 102 ntBASIC-0.19□□□□□ -2.44
PDLIM3Q53GG5 SNORD90-201ENST00000391145 111 ntBASIC-0.19□□□□□ -2.44
PDLIM3Q53GG5 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.19□□□□□ -2.44
PDLIM3Q53GG5 SNORD20-201ENST00000384550 80 ntBASIC-0.2□□□□□ -2.44
PDLIM3Q53GG5 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.2□□□□□ -2.44
PDLIM3Q53GG5 U3.27-201ENST00000391237 200 ntBASIC-0.2□□□□□ -2.44
PDLIM3Q53GG5 RNU6-175P-201ENST00000516896 107 ntBASIC-0.2□□□□□ -2.44
PDLIM3Q53GG5 U2.22-201ENST00000636441 106 ntBASIC-0.2□□□□□ -2.44
PDLIM3Q53GG5 MIR20A-201ENST00000362279 71 ntBASIC-0.21□□□□□ -2.44
PDLIM3Q53GG5 SNORA63.2-201ENST00000362603 126 ntBASIC-0.21□□□□□ -2.44
PDLIM3Q53GG5 SNORD114-3-201ENST00000364969 75 ntBASIC-0.21□□□□□ -2.44
PDLIM3Q53GG5 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.21□□□□□ -2.44
PDLIM3Q53GG5 RNU6-406P-201ENST00000516470 107 ntBASIC-0.21□□□□□ -2.44
PDLIM3Q53GG5 MIR4320-201ENST00000636981 65 ntBASIC-0.21□□□□□ -2.44
PDLIM3Q53GG5 SNORD42B-201ENST00000458893 67 ntBASIC-0.22□□□□□ -2.44
PDLIM3Q53GG5 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.22□□□□□ -2.44
PDLIM3Q53GG5 AP000676.1-201ENST00000533307 52 ntBASIC-0.22□□□□□ -2.44
PDLIM3Q53GG5 MIR548AI-201ENST00000579940 88 ntBASIC-0.22□□□□□ -2.44
PDLIM3Q53GG5 MTATP6P29-201ENST00000415057 132 ntBASIC-0.23□□□□□ -2.45
PDLIM3Q53GG5 MIR148A-201ENST00000362215 68 ntBASIC-0.24□□□□□ -2.45
PDLIM3Q53GG5 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.24□□□□□ -2.45
PDLIM3Q53GG5 MIR587-201ENST00000384845 96 ntBASIC-0.24□□□□□ -2.45
PDLIM3Q53GG5 MT-TQ-201ENST00000387372 72 ntBASIC-0.24□□□□□ -2.45
PDLIM3Q53GG5 MTATP8P2-201ENST00000435212 202 ntBASIC-0.24□□□□□ -2.45
PDLIM3Q53GG5 MIR6507-201ENST00000613630 70 ntBASIC-0.24□□□□□ -2.45
PDLIM3Q53GG5 AC244090.1-201ENST00000441884 93 ntBASIC-0.25□□□□□ -2.45
PDLIM3Q53GG5 MIR582-201ENST00000365731 98 ntBASIC-0.26□□□□□ -2.45
PDLIM3Q53GG5 SNORD4A-201ENST00000459174 72 ntBASIC-0.26□□□□□ -2.45
PDLIM3Q53GG5 RNU7-153P-201ENST00000516455 62 ntBASIC-0.26□□□□□ -2.45
PDLIM3Q53GG5 SNORD114-4-201ENST00000363962 75 ntBASIC-0.27□□□□□ -2.45
PDLIM3Q53GG5 RNU6-44P-201ENST00000384045 107 ntBASIC-0.27□□□□□ -2.45
PDLIM3Q53GG5 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.27□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms