Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 YWHAEP2-201ENST00000580066 112 ntBASIC0.32□□□□□ -2.36
CIITAP33076 RNA5SP128-201ENST00000365305 116 ntBASIC0.31□□□□□ -2.36
CIITAP33076 RNU6V-201ENST00000384105 107 ntBASIC0.31□□□□□ -2.36
CIITAP33076 MIR329-2-201ENST00000385029 84 ntBASIC0.31□□□□□ -2.36
CIITAP33076 MIR216B-201ENST00000390186 82 ntBASIC0.31□□□□□ -2.36
CIITAP33076 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.31□□□□□ -2.36
CIITAP33076 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.31□□□□□ -2.36
CIITAP33076 AC069113.3-201ENST00000521019 150 ntBASIC0.31□□□□□ -2.36
CIITAP33076 MIR2909-201ENST00000617113 69 ntBASIC0.31□□□□□ -2.36
CIITAP33076 MIR499B-201ENST00000636498 73 ntBASIC0.31□□□□□ -2.36
CIITAP33076 Y_RNA.73-201ENST00000362910 113 ntBASIC0.3□□□□□ -2.36
CIITAP33076 Y_RNA.125-201ENST00000363371 111 ntBASIC0.3□□□□□ -2.36
CIITAP33076 RNU6-54P-201ENST00000365563 107 ntBASIC0.3□□□□□ -2.36
CIITAP33076 AC073261.1-201ENST00000429409 121 ntBASIC0.3□□□□□ -2.36
CIITAP33076 SNORA25.13-201ENST00000516395 103 ntBASIC0.3□□□□□ -2.36
CIITAP33076 MIR548AE1-201ENST00000583292 70 ntBASIC0.3□□□□□ -2.36
CIITAP33076 MIR548AD-201ENST00000584780 82 ntBASIC0.3□□□□□ -2.36
CIITAP33076 AC093729.1-201ENST00000513074 128 ntBASIC0.29□□□□□ -2.36
CIITAP33076 RNU6-762P-201ENST00000517107 102 ntBASIC0.29□□□□□ -2.36
CIITAP33076 AC140658.3-201ENST00000567603 271 ntBASIC0.29□□□□□ -2.36
CIITAP33076 MIR4677-201ENST00000584153 80 ntBASIC0.29□□□□□ -2.36
CIITAP33076 AC006160.2-201ENST00000637708 154 ntBASIC0.29□□□□□ -2.36
CIITAP33076 MIR1265-201ENST00000408444 86 ntBASIC0.28□□□□□ -2.36
CIITAP33076 MIR3925-201ENST00000584674 77 ntBASIC0.28□□□□□ -2.36
CIITAP33076 SNORA9.1-201ENST00000362412 131 ntBASIC0.27□□□□□ -2.37
CIITAP33076 RNU6-624P-201ENST00000363411 107 ntBASIC0.27□□□□□ -2.37
CIITAP33076 Y_RNA.437-201ENST00000384113 113 ntBASIC0.27□□□□□ -2.37
CIITAP33076 RNU6-127P-201ENST00000390897 107 ntBASIC0.27□□□□□ -2.37
CIITAP33076 RNA5SP299-201ENST00000391203 116 ntBASIC0.27□□□□□ -2.37
CIITAP33076 Y_RNA.611-201ENST00000410682 108 ntBASIC0.27□□□□□ -2.37
CIITAP33076 SNORD42B-201ENST00000458893 67 ntBASIC0.27□□□□□ -2.37
CIITAP33076 MIR4473-201ENST00000583731 91 ntBASIC0.27□□□□□ -2.37
CIITAP33076 RNY1P1-201ENST00000364372 112 ntBASIC0.26□□□□□ -2.37
CIITAP33076 RNU6-979P-201ENST00000383896 107 ntBASIC0.26□□□□□ -2.37
CIITAP33076 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.26□□□□□ -2.37
CIITAP33076 MIR450A2-201ENST00000385022 100 ntBASIC0.25□□□□□ -2.37
CIITAP33076 RNU6-1177P-201ENST00000391058 104 ntBASIC0.25□□□□□ -2.37
CIITAP33076 MIR548H2-201ENST00000408874 88 ntBASIC0.25□□□□□ -2.37
CIITAP33076 AC062037.1-201ENST00000605302 128 ntBASIC0.25□□□□□ -2.37
CIITAP33076 U7.6-201ENST00000610841 64 ntBASIC0.25□□□□□ -2.37
CIITAP33076 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.25□□□□□ -2.37
CIITAP33076 IGLL4P-201ENST00000614590 133 ntBASIC0.25□□□□□ -2.37
CIITAP33076 MIR494-201ENST00000349529 81 ntBASIC0.24□□□□□ -2.37
CIITAP33076 RNU6-495P-201ENST00000362995 107 ntBASIC0.24□□□□□ -2.37
CIITAP33076 RNU6-161P-201ENST00000363051 106 ntBASIC0.24□□□□□ -2.37
CIITAP33076 RNU6-824P-201ENST00000363724 104 ntBASIC0.24□□□□□ -2.37
CIITAP33076 SNORD73B-201ENST00000364394 72 ntBASIC0.24□□□□□ -2.37
CIITAP33076 RNY4P3-201ENST00000365254 95 ntBASIC0.24□□□□□ -2.37
CIITAP33076 RNU7-129P-201ENST00000516128 62 ntBASIC0.24□□□□□ -2.37
CIITAP33076 MIR5588-201ENST00000581890 63 ntBASIC0.24□□□□□ -2.37
CIITAP33076 MIR4315-1-201ENST00000636800 73 ntBASIC0.24□□□□□ -2.37
CIITAP33076 MIR4315-2-201ENST00000640925 73 ntBASIC0.24□□□□□ -2.37
CIITAP33076 SNORD115-37-201ENST00000363768 82 ntBASIC0.23□□□□□ -2.37
CIITAP33076 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
CIITAP33076 Y_RNA.407-201ENST00000383986 113 ntBASIC0.22□□□□□ -2.37
CIITAP33076 MIR652-201ENST00000385278 98 ntBASIC0.22□□□□□ -2.37
CIITAP33076 AL450471.1-201ENST00000447509 127 ntBASIC0.22□□□□□ -2.37
CIITAP33076 AC022137.1-201ENST00000483735 151 ntBASIC0.22□□□□□ -2.37
CIITAP33076 RNU6-782P-201ENST00000516852 104 ntBASIC0.22□□□□□ -2.37
CIITAP33076 uc_338.10-201ENST00000621872 182 ntBASIC0.22□□□□□ -2.37
CIITAP33076 MIR516B1-201ENST00000385211 90 ntBASIC0.21□□□□□ -2.38
CIITAP33076 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.21□□□□□ -2.38
CIITAP33076 AC097510.1-201ENST00000510945 133 ntBASIC0.21□□□□□ -2.38
CIITAP33076 MIR4679-1-201ENST00000637619 75 ntBASIC0.21□□□□□ -2.38
CIITAP33076 MIR6759-201ENST00000638110 65 ntBASIC0.21□□□□□ -2.38
CIITAP33076 RNU5F-1-201ENST00000362507 117 ntBASIC0.2□□□□□ -2.38
CIITAP33076 MIR876-201ENST00000401147 81 ntBASIC0.2□□□□□ -2.38
CIITAP33076 MIR1295A-201ENST00000408463 79 ntBASIC0.2□□□□□ -2.38
CIITAP33076 RNU7-24P-201ENST00000458867 62 ntBASIC0.2□□□□□ -2.38
CIITAP33076 RNU7-171P-201ENST00000459581 62 ntBASIC0.2□□□□□ -2.38
CIITAP33076 MIR4768-201ENST00000585270 74 ntBASIC0.2□□□□□ -2.38
CIITAP33076 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.2□□□□□ -2.38
CIITAP33076 RNU6-478P-201ENST00000363904 110 ntBASIC0.19□□□□□ -2.38
CIITAP33076 RNU6-382P-201ENST00000365181 106 ntBASIC0.19□□□□□ -2.38
CIITAP33076 RNU6-1152P-201ENST00000384576 107 ntBASIC0.19□□□□□ -2.38
CIITAP33076 MIR643-201ENST00000385267 97 ntBASIC0.19□□□□□ -2.38
CIITAP33076 SNORD75.2-201ENST00000408784 58 ntBASIC0.19□□□□□ -2.38
CIITAP33076 RNU6-1108P-201ENST00000516308 104 ntBASIC0.19□□□□□ -2.38
CIITAP33076 AC006254.2-201ENST00000603259 279 ntBASIC0.19□□□□□ -2.38
CIITAP33076 U6.81-201ENST00000612550 106 ntBASIC0.19□□□□□ -2.38
CIITAP33076 RNU6-208P-201ENST00000362431 107 ntBASIC0.18□□□□□ -2.38
CIITAP33076 SNORA42.1-201ENST00000363515 137 ntBASIC0.18□□□□□ -2.38
CIITAP33076 RNU6-820P-201ENST00000384273 107 ntBASIC0.18□□□□□ -2.38
CIITAP33076 RNU6-154P-201ENST00000384306 106 ntBASIC0.18□□□□□ -2.38
CIITAP33076 SNORD77.2-201ENST00000391045 68 ntBASIC0.18□□□□□ -2.38
CIITAP33076 Y_RNA.606-201ENST00000410579 103 ntBASIC0.18□□□□□ -2.38
CIITAP33076 Y_RNA.607-201ENST00000410597 98 ntBASIC0.18□□□□□ -2.38
CIITAP33076 RNU6-592P-201ENST00000411333 103 ntBASIC0.18□□□□□ -2.38
CIITAP33076 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.18□□□□□ -2.38
CIITAP33076 RNU6-557P-201ENST00000516842 110 ntBASIC0.18□□□□□ -2.38
CIITAP33076 RN7SL660P-201ENST00000614852 299 ntBASIC0.18□□□□□ -2.38
CIITAP33076 MIR371B-201ENST00000638082 66 ntBASIC0.18□□□□□ -2.38
CIITAP33076 Y_RNA.185-201ENST00000363894 100 ntBASIC0.17□□□□□ -2.38
CIITAP33076 Y_RNA.388-201ENST00000383919 113 ntBASIC0.17□□□□□ -2.38
CIITAP33076 Y_RNA.426-201ENST00000384068 113 ntBASIC0.17□□□□□ -2.38
CIITAP33076 RNU6-175P-201ENST00000516896 107 ntBASIC0.17□□□□□ -2.38
CIITAP33076 RNU7-188P-201ENST00000517063 64 ntBASIC0.17□□□□□ -2.38
CIITAP33076 SCARNA11.2-201ENST00000517183 154 ntBASIC0.17□□□□□ -2.38
CIITAP33076 MIR5589-201ENST00000579442 60 ntBASIC0.17□□□□□ -2.38
CIITAP33076 MIR6718-201ENST00000616153 80 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 280.7 ms