Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNORA9.1-201ENST00000362412 131 ntBASIC0.32□□□□□ -2.36
SMARCA1P28370 RNU6V-201ENST00000384105 107 ntBASIC0.32□□□□□ -2.36
SMARCA1P28370 SNORA24B-201ENST00000384176 131 ntBASIC0.32□□□□□ -2.36
SMARCA1P28370 RNU6-675P-201ENST00000384236 104 ntBASIC0.32□□□□□ -2.36
SMARCA1P28370 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
SMARCA1P28370 RNU7-129P-201ENST00000516128 62 ntBASIC0.32□□□□□ -2.36
SMARCA1P28370 Y_RNA.125-201ENST00000363371 111 ntBASIC0.31□□□□□ -2.36
SMARCA1P28370 RNU6-294P-201ENST00000364999 102 ntBASIC0.31□□□□□ -2.36
SMARCA1P28370 MIR548AD-201ENST00000584780 82 ntBASIC0.31□□□□□ -2.36
SMARCA1P28370 U7.6-201ENST00000610841 64 ntBASIC0.31□□□□□ -2.36
SMARCA1P28370 MIR329-2-201ENST00000385029 84 ntBASIC0.3□□□□□ -2.36
SMARCA1P28370 RNU6-127P-201ENST00000390897 107 ntBASIC0.3□□□□□ -2.36
SMARCA1P28370 SNORA25.13-201ENST00000516395 103 ntBASIC0.3□□□□□ -2.36
SMARCA1P28370 MIR4473-201ENST00000583731 91 ntBASIC0.3□□□□□ -2.36
SMARCA1P28370 RNU6-54P-201ENST00000365563 107 ntBASIC0.29□□□□□ -2.36
SMARCA1P28370 MIR4636-201ENST00000582271 80 ntBASIC0.29□□□□□ -2.36
SMARCA1P28370 MIR548AE1-201ENST00000583292 70 ntBASIC0.29□□□□□ -2.36
SMARCA1P28370 MIR4677-201ENST00000584153 80 ntBASIC0.29□□□□□ -2.36
SMARCA1P28370 MIR548BB-201ENST00000626714 66 ntBASIC0.29□□□□□ -2.36
SMARCA1P28370 snoU13.17-201ENST00000458802 104 ntBASIC0.28□□□□□ -2.36
SMARCA1P28370 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.28□□□□□ -2.36
SMARCA1P28370 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.27□□□□□ -2.37
SMARCA1P28370 AC093729.1-201ENST00000513074 128 ntBASIC0.27□□□□□ -2.37
SMARCA1P28370 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.27□□□□□ -2.37
SMARCA1P28370 RNY4P3-201ENST00000365254 95 ntBASIC0.26□□□□□ -2.37
SMARCA1P28370 Y_RNA.437-201ENST00000384113 113 ntBASIC0.26□□□□□ -2.37
SMARCA1P28370 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
SMARCA1P28370 MIR3925-201ENST00000584674 77 ntBASIC0.26□□□□□ -2.37
SMARCA1P28370 MIR4315-1-201ENST00000636800 73 ntBASIC0.26□□□□□ -2.37
SMARCA1P28370 MIR4315-2-201ENST00000640925 73 ntBASIC0.26□□□□□ -2.37
SMARCA1P28370 SNORD115-37-201ENST00000363768 82 ntBASIC0.25□□□□□ -2.37
SMARCA1P28370 Y_RNA.407-201ENST00000383986 113 ntBASIC0.25□□□□□ -2.37
SMARCA1P28370 Y_RNA.611-201ENST00000410682 108 ntBASIC0.25□□□□□ -2.37
SMARCA1P28370 MIR6759-201ENST00000638110 65 ntBASIC0.25□□□□□ -2.37
SMARCA1P28370 Y_RNA.73-201ENST00000362910 113 ntBASIC0.24□□□□□ -2.37
SMARCA1P28370 RNU6-1255P-201ENST00000363434 112 ntBASIC0.24□□□□□ -2.37
SMARCA1P28370 MIR5589-201ENST00000579442 60 ntBASIC0.24□□□□□ -2.37
SMARCA1P28370 IGLL4P-201ENST00000614590 133 ntBASIC0.24□□□□□ -2.37
SMARCA1P28370 uc_338.10-201ENST00000621872 182 ntBASIC0.24□□□□□ -2.37
SMARCA1P28370 RNY1P1-201ENST00000364372 112 ntBASIC0.23□□□□□ -2.37
SMARCA1P28370 MIR516B1-201ENST00000385211 90 ntBASIC0.23□□□□□ -2.37
SMARCA1P28370 MIR643-201ENST00000385267 97 ntBASIC0.23□□□□□ -2.37
SMARCA1P28370 RNU6-1177P-201ENST00000391058 104 ntBASIC0.23□□□□□ -2.37
SMARCA1P28370 RNA5SP299-201ENST00000391203 116 ntBASIC0.23□□□□□ -2.37
SMARCA1P28370 SNORD42B-201ENST00000458893 67 ntBASIC0.23□□□□□ -2.37
SMARCA1P28370 RNU6-782P-201ENST00000516852 104 ntBASIC0.23□□□□□ -2.37
SMARCA1P28370 AC140658.3-201ENST00000567603 271 ntBASIC0.23□□□□□ -2.37
SMARCA1P28370 MIR652-201ENST00000385278 98 ntBASIC0.22□□□□□ -2.37
SMARCA1P28370 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
SMARCA1P28370 RNU6-762P-201ENST00000517107 102 ntBASIC0.22□□□□□ -2.37
SMARCA1P28370 RNU5F-1-201ENST00000362507 117 ntBASIC0.21□□□□□ -2.38
SMARCA1P28370 RNU6-495P-201ENST00000362995 107 ntBASIC0.21□□□□□ -2.38
SMARCA1P28370 Y_RNA.185-201ENST00000363894 100 ntBASIC0.21□□□□□ -2.38
SMARCA1P28370 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.21□□□□□ -2.38
SMARCA1P28370 MIR4802-201ENST00000581881 80 ntBASIC0.21□□□□□ -2.38
SMARCA1P28370 AC006160.2-201ENST00000637708 154 ntBASIC0.21□□□□□ -2.38
SMARCA1P28370 Y_RNA.43-201ENST00000362670 111 ntBASIC0.2□□□□□ -2.38
SMARCA1P28370 RNU6-624P-201ENST00000363411 107 ntBASIC0.2□□□□□ -2.38
SMARCA1P28370 RNU6-652P-201ENST00000365488 107 ntBASIC0.2□□□□□ -2.38
SMARCA1P28370 MIR548H2-201ENST00000408874 88 ntBASIC0.2□□□□□ -2.38
SMARCA1P28370 AC084368.1-201ENST00000620935 65 ntBASIC0.2□□□□□ -2.38
SMARCA1P28370 RNU6-161P-201ENST00000363051 106 ntBASIC0.19□□□□□ -2.38
SMARCA1P28370 RNA5SP214-201ENST00000363378 118 ntBASIC0.19□□□□□ -2.38
SMARCA1P28370 RNU6-824P-201ENST00000363724 104 ntBASIC0.19□□□□□ -2.38
SMARCA1P28370 RNU6-154P-201ENST00000384306 106 ntBASIC0.19□□□□□ -2.38
SMARCA1P28370 RNU6-30P-201ENST00000384561 107 ntBASIC0.19□□□□□ -2.38
SMARCA1P28370 MIR450A2-201ENST00000385022 100 ntBASIC0.19□□□□□ -2.38
SMARCA1P28370 AC097510.1-201ENST00000510945 133 ntBASIC0.19□□□□□ -2.38
SMARCA1P28370 MIR494-201ENST00000349529 81 ntBASIC0.18□□□□□ -2.38
SMARCA1P28370 SCARNA11.2-201ENST00000517183 154 ntBASIC0.18□□□□□ -2.38
SMARCA1P28370 MIR5588-201ENST00000581890 63 ntBASIC0.18□□□□□ -2.38
SMARCA1P28370 AC104408.1-201ENST00000605241 170 ntBASIC0.18□□□□□ -2.38
SMARCA1P28370 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.18□□□□□ -2.38
SMARCA1P28370 RNA5SP98-201ENST00000363158 137 ntBASIC0.17□□□□□ -2.38
SMARCA1P28370 SNORA42.1-201ENST00000363515 137 ntBASIC0.17□□□□□ -2.38
SMARCA1P28370 RNU6-979P-201ENST00000383896 107 ntBASIC0.17□□□□□ -2.38
SMARCA1P28370 MIR876-201ENST00000401147 81 ntBASIC0.17□□□□□ -2.38
SMARCA1P28370 RNU7-188P-201ENST00000517063 64 ntBASIC0.17□□□□□ -2.38
SMARCA1P28370 MIR5190-201ENST00000581537 80 ntBASIC0.17□□□□□ -2.38
SMARCA1P28370 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.17□□□□□ -2.38
SMARCA1P28370 SNORD114-9-201ENST00000364370 72 ntBASIC0.16□□□□□ -2.38
SMARCA1P28370 RNU6-382P-201ENST00000365181 106 ntBASIC0.16□□□□□ -2.38
SMARCA1P28370 AL450471.1-201ENST00000447509 127 ntBASIC0.16□□□□□ -2.38
SMARCA1P28370 RNU6-1108P-201ENST00000516308 104 ntBASIC0.16□□□□□ -2.38
SMARCA1P28370 MIR6718-201ENST00000616153 80 ntBASIC0.16□□□□□ -2.38
SMARCA1P28370 MIR371B-201ENST00000638082 66 ntBASIC0.16□□□□□ -2.38
SMARCA1P28370 RNU6-208P-201ENST00000362431 107 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 SNORD75.2-201ENST00000408784 58 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 RNU7-24P-201ENST00000458867 62 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 snoU13.19-201ENST00000459148 104 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 AC022137.1-201ENST00000483735 151 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 SCARNA17.3-201ENST00000516381 125 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 MIR4768-201ENST00000585270 74 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 AC062037.1-201ENST00000605302 128 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 RN7SL660P-201ENST00000614852 299 ntBASIC0.15□□□□□ -2.39
SMARCA1P28370 SNORD73B-201ENST00000364394 72 ntBASIC0.14□□□□□ -2.39
SMARCA1P28370 SNORD77.2-201ENST00000391045 68 ntBASIC0.14□□□□□ -2.39
SMARCA1P28370 MIR1295A-201ENST00000408463 79 ntBASIC0.14□□□□□ -2.39
SMARCA1P28370 MIR4773-1-201ENST00000637203 78 ntBASIC0.14□□□□□ -2.39
SMARCA1P28370 SNORD114-4-201ENST00000363962 75 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 294.3 ms