Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.41□□□□□ -2.34
RAPGEF3O95398 AC073261.1-201ENST00000429409 121 ntBASIC0.41□□□□□ -2.34
RAPGEF3O95398 AC093729.1-201ENST00000513074 128 ntBASIC0.41□□□□□ -2.34
RAPGEF3O95398 RNU6-267P-201ENST00000516714 103 ntBASIC0.41□□□□□ -2.34
RAPGEF3O95398 IGLL4P-201ENST00000614590 133 ntBASIC0.41□□□□□ -2.34
RAPGEF3O95398 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.41□□□□□ -2.34
RAPGEF3O95398 RNU5F-1-201ENST00000362507 117 ntBASIC0.4□□□□□ -2.35
RAPGEF3O95398 Y_RNA.43-201ENST00000362670 111 ntBASIC0.4□□□□□ -2.35
RAPGEF3O95398 Y_RNA.593-201ENST00000410292 98 ntBASIC0.4□□□□□ -2.35
RAPGEF3O95398 RNA5SP25-201ENST00000410815 110 ntBASIC0.4□□□□□ -2.35
RAPGEF3O95398 AC108740.1-201ENST00000498629 225 ntBASIC0.4□□□□□ -2.35
RAPGEF3O95398 RNU7-153P-201ENST00000516455 62 ntBASIC0.4□□□□□ -2.35
RAPGEF3O95398 RNA5SP134-201ENST00000516492 96 ntBASIC0.4□□□□□ -2.35
RAPGEF3O95398 Y_RNA.125-201ENST00000363371 111 ntBASIC0.39□□□□□ -2.35
RAPGEF3O95398 AC069113.3-201ENST00000521019 150 ntBASIC0.39□□□□□ -2.35
RAPGEF3O95398 MIR548BB-201ENST00000626714 66 ntBASIC0.39□□□□□ -2.35
RAPGEF3O95398 snoU13.19-201ENST00000459148 104 ntBASIC0.38□□□□□ -2.35
RAPGEF3O95398 SNORA25.13-201ENST00000516395 103 ntBASIC0.38□□□□□ -2.35
RAPGEF3O95398 RNU6-1255P-201ENST00000363434 112 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 RNY1P1-201ENST00000364372 112 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 SNORA24B-201ENST00000384176 131 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 MIR450A2-201ENST00000385022 100 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 RNU6-1052P-201ENST00000411398 104 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 HMGN2P22-201ENST00000427588 175 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 RNU6-719P-201ENST00000516671 104 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 MIR3140-201ENST00000583685 90 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 MIR548AD-201ENST00000584780 82 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 MIR4315-1-201ENST00000636800 73 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 MIR4315-2-201ENST00000640925 73 ntBASIC0.37□□□□□ -2.35
RAPGEF3O95398 RNU6-815P-201ENST00000384080 113 ntBASIC0.36□□□□□ -2.35
RAPGEF3O95398 RNU6V-201ENST00000384105 107 ntBASIC0.36□□□□□ -2.35
RAPGEF3O95398 MIR501-201ENST00000390204 84 ntBASIC0.36□□□□□ -2.35
RAPGEF3O95398 RNU6-1232P-201ENST00000516299 86 ntBASIC0.36□□□□□ -2.35
RAPGEF3O95398 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.36□□□□□ -2.35
RAPGEF3O95398 Y_RNA.407-201ENST00000383986 113 ntBASIC0.35□□□□□ -2.35
RAPGEF3O95398 Y_RNA.611-201ENST00000410682 108 ntBASIC0.35□□□□□ -2.35
RAPGEF3O95398 RNU7-129P-201ENST00000516128 62 ntBASIC0.35□□□□□ -2.35
RAPGEF3O95398 RNU5B-6P-201ENST00000516765 68 ntBASIC0.35□□□□□ -2.35
RAPGEF3O95398 RNU6-1177P-201ENST00000391058 104 ntBASIC0.34□□□□□ -2.36
RAPGEF3O95398 Z95118.1-201ENST00000421372 247 ntBASIC0.34□□□□□ -2.36
RAPGEF3O95398 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.34□□□□□ -2.36
RAPGEF3O95398 AC006254.2-201ENST00000603259 279 ntBASIC0.34□□□□□ -2.36
RAPGEF3O95398 uc_338.10-201ENST00000621872 182 ntBASIC0.34□□□□□ -2.36
RAPGEF3O95398 RNU6-652P-201ENST00000365488 107 ntBASIC0.33□□□□□ -2.36
RAPGEF3O95398 Y_RNA.437-201ENST00000384113 113 ntBASIC0.33□□□□□ -2.36
RAPGEF3O95398 SNORD90-201ENST00000391145 111 ntBASIC0.33□□□□□ -2.36
RAPGEF3O95398 AC140658.3-201ENST00000567603 271 ntBASIC0.33□□□□□ -2.36
RAPGEF3O95398 MIR4677-201ENST00000584153 80 ntBASIC0.33□□□□□ -2.36
RAPGEF3O95398 SNORD114-4-201ENST00000363962 75 ntBASIC0.32□□□□□ -2.36
RAPGEF3O95398 RNU6-820P-201ENST00000384273 107 ntBASIC0.32□□□□□ -2.36
RAPGEF3O95398 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.32□□□□□ -2.36
RAPGEF3O95398 MIR4473-201ENST00000583731 91 ntBASIC0.32□□□□□ -2.36
RAPGEF3O95398 RNU6-624P-201ENST00000363411 107 ntBASIC0.31□□□□□ -2.36
RAPGEF3O95398 Y_RNA.264-201ENST00000364665 102 ntBASIC0.31□□□□□ -2.36
RAPGEF3O95398 Y_RNA.426-201ENST00000384068 113 ntBASIC0.31□□□□□ -2.36
RAPGEF3O95398 AC097510.1-201ENST00000510945 133 ntBASIC0.31□□□□□ -2.36
RAPGEF3O95398 RNU6-782P-201ENST00000516852 104 ntBASIC0.31□□□□□ -2.36
RAPGEF3O95398 MIR499B-201ENST00000636498 73 ntBASIC0.31□□□□□ -2.36
RAPGEF3O95398 AC006160.2-201ENST00000637708 154 ntBASIC0.31□□□□□ -2.36
RAPGEF3O95398 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
RAPGEF3O95398 RNU6-127P-201ENST00000390897 107 ntBASIC0.3□□□□□ -2.36
RAPGEF3O95398 RNU7-24P-201ENST00000458867 62 ntBASIC0.3□□□□□ -2.36
RAPGEF3O95398 Y_RNA.660-201ENST00000516002 120 ntBASIC0.3□□□□□ -2.36
RAPGEF3O95398 RNU6-54P-201ENST00000365563 107 ntBASIC0.29□□□□□ -2.36
RAPGEF3O95398 AL450471.1-201ENST00000447509 127 ntBASIC0.29□□□□□ -2.36
RAPGEF3O95398 MIR5588-201ENST00000581890 63 ntBASIC0.29□□□□□ -2.36
RAPGEF3O95398 RNU6-495P-201ENST00000362995 107 ntBASIC0.28□□□□□ -2.36
RAPGEF3O95398 RNU6-979P-201ENST00000383896 107 ntBASIC0.27□□□□□ -2.37
RAPGEF3O95398 SNORD77.2-201ENST00000391045 68 ntBASIC0.27□□□□□ -2.37
RAPGEF3O95398 SNORD75.2-201ENST00000408784 58 ntBASIC0.27□□□□□ -2.37
RAPGEF3O95398 RNU6-592P-201ENST00000411333 103 ntBASIC0.27□□□□□ -2.37
RAPGEF3O95398 snoU13.17-201ENST00000458802 104 ntBASIC0.27□□□□□ -2.37
RAPGEF3O95398 AC084368.1-201ENST00000620935 65 ntBASIC0.27□□□□□ -2.37
RAPGEF3O95398 RNU6-208P-201ENST00000362431 107 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 RNA5SP331-201ENST00000364986 107 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 MIR516B1-201ENST00000385211 90 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 SNORA75.1-201ENST00000391130 148 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 MIR892B-201ENST00000401279 77 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 Y_RNA.607-201ENST00000410597 98 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 RNU6-557P-201ENST00000516842 110 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 MIR548AE1-201ENST00000583292 70 ntBASIC0.26□□□□□ -2.37
RAPGEF3O95398 SNORA42.1-201ENST00000363515 137 ntBASIC0.25□□□□□ -2.37
RAPGEF3O95398 RNU6-242P-201ENST00000384359 107 ntBASIC0.25□□□□□ -2.37
RAPGEF3O95398 MIR4743-201ENST00000584576 69 ntBASIC0.25□□□□□ -2.37
RAPGEF3O95398 MIR494-201ENST00000349529 81 ntBASIC0.24□□□□□ -2.37
RAPGEF3O95398 Y_RNA.73-201ENST00000362910 113 ntBASIC0.24□□□□□ -2.37
RAPGEF3O95398 SNORD114-29-201ENST00000364819 70 ntBASIC0.24□□□□□ -2.37
RAPGEF3O95398 RNU6-154P-201ENST00000384306 106 ntBASIC0.24□□□□□ -2.37
RAPGEF3O95398 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.24□□□□□ -2.37
RAPGEF3O95398 AC022137.1-201ENST00000483735 151 ntBASIC0.24□□□□□ -2.37
RAPGEF3O95398 MIR610-201ENST00000385139 96 ntBASIC0.23□□□□□ -2.37
RAPGEF3O95398 MIR876-201ENST00000401147 81 ntBASIC0.23□□□□□ -2.37
RAPGEF3O95398 Y_RNA.606-201ENST00000410579 103 ntBASIC0.23□□□□□ -2.37
RAPGEF3O95398 RNU7-171P-201ENST00000459581 62 ntBASIC0.23□□□□□ -2.37
RAPGEF3O95398 SCARNA17.3-201ENST00000516381 125 ntBASIC0.23□□□□□ -2.37
RAPGEF3O95398 MIR3925-201ENST00000584674 77 ntBASIC0.23□□□□□ -2.37
RAPGEF3O95398 MIR652-201ENST00000385278 98 ntBASIC0.22□□□□□ -2.37
RAPGEF3O95398 RNU6-762P-201ENST00000517107 102 ntBASIC0.22□□□□□ -2.37
RAPGEF3O95398 U6.81-201ENST00000612550 106 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms