Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MIR3202-2-201ENST00000635980 79 ntBASIC0.95□□□□□ -2.26
NKX2-4Q9H2Z4 MIR924-201ENST00000638017 53 ntBASIC0.95□□□□□ -2.26
NKX2-4Q9H2Z4 Y_RNA.258-201ENST00000364613 105 ntBASIC0.94□□□□□ -2.26
NKX2-4Q9H2Z4 RNY4P3-201ENST00000365254 95 ntBASIC0.94□□□□□ -2.26
NKX2-4Q9H2Z4 AL109933.3-201ENST00000619095 188 ntBASIC0.94□□□□□ -2.26
NKX2-4Q9H2Z4 RNU6-726P-201ENST00000364680 107 ntBASIC0.93□□□□□ -2.26
NKX2-4Q9H2Z4 RNU6-1051P-201ENST00000365471 102 ntBASIC0.93□□□□□ -2.26
NKX2-4Q9H2Z4 SNORD41.1-201ENST00000391000 69 ntBASIC0.93□□□□□ -2.26
NKX2-4Q9H2Z4 RNA5SP227-201ENST00000516184 113 ntBASIC0.93□□□□□ -2.26
NKX2-4Q9H2Z4 MIR4666B-201ENST00000578142 81 ntBASIC0.93□□□□□ -2.26
NKX2-4Q9H2Z4 AC010487.4-201ENST00000637027 61 ntBASIC0.93□□□□□ -2.26
NKX2-4Q9H2Z4 MIR617-201ENST00000385030 97 ntBASIC0.92□□□□□ -2.26
NKX2-4Q9H2Z4 FGF7P7-201ENST00000514120 227 ntBASIC0.92□□□□□ -2.26
NKX2-4Q9H2Z4 RNA5SP268-201ENST00000516828 124 ntBASIC0.92□□□□□ -2.26
NKX2-4Q9H2Z4 MIR548AG2-201ENST00000581228 64 ntBASIC0.92□□□□□ -2.26
NKX2-4Q9H2Z4 MIR6828-201ENST00000636181 60 ntBASIC0.92□□□□□ -2.26
NKX2-4Q9H2Z4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
NKX2-4Q9H2Z4 RNU5F-1-201ENST00000362507 117 ntBASIC0.91□□□□□ -2.26
NKX2-4Q9H2Z4 RNU6-652P-201ENST00000365488 107 ntBASIC0.91□□□□□ -2.26
NKX2-4Q9H2Z4 MIR140-201ENST00000385282 100 ntBASIC0.91□□□□□ -2.26
NKX2-4Q9H2Z4 SNORA36.1-201ENST00000363424 132 ntBASIC0.9□□□□□ -2.27
NKX2-4Q9H2Z4 RNY1P8-201ENST00000383970 114 ntBASIC0.9□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-1124P-201ENST00000384169 107 ntBASIC0.9□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-110P-201ENST00000384508 104 ntBASIC0.9□□□□□ -2.27
NKX2-4Q9H2Z4 SNORD78.1-201ENST00000390866 65 ntBASIC0.9□□□□□ -2.27
NKX2-4Q9H2Z4 PSMC1P5-201ENST00000512850 177 ntBASIC0.9□□□□□ -2.27
NKX2-4Q9H2Z4 SNORA63.2-201ENST00000362603 126 ntBASIC0.89□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-624P-201ENST00000363411 107 ntBASIC0.89□□□□□ -2.27
NKX2-4Q9H2Z4 Y_RNA.316-201ENST00000365118 111 ntBASIC0.89□□□□□ -2.27
NKX2-4Q9H2Z4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.89□□□□□ -2.27
NKX2-4Q9H2Z4 MIR508-201ENST00000384857 115 ntBASIC0.89□□□□□ -2.27
NKX2-4Q9H2Z4 MIR216B-201ENST00000390186 82 ntBASIC0.89□□□□□ -2.27
NKX2-4Q9H2Z4 SNORD90-201ENST00000391145 111 ntBASIC0.89□□□□□ -2.27
NKX2-4Q9H2Z4 AC103810.9-201ENST00000606688 112 ntBASIC0.89□□□□□ -2.27
NKX2-4Q9H2Z4 RNA5SP257-201ENST00000363023 116 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 MIR519E-201ENST00000385075 84 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-129P-201ENST00000391022 107 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 U3.27-201ENST00000391237 200 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-1052P-201ENST00000411398 104 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-719P-201ENST00000516671 104 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 MIR3140-201ENST00000583685 90 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 MIR8087-201ENST00000612745 78 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 MIR6835-201ENST00000621552 64 ntBASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-228P-201ENST00000362700 106 ntBASIC0.87□□□□□ -2.27
NKX2-4Q9H2Z4 Y_RNA.313-201ENST00000365095 103 ntBASIC0.87□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-787P-201ENST00000384032 107 ntBASIC0.87□□□□□ -2.27
NKX2-4Q9H2Z4 AL450471.1-201ENST00000447509 127 ntBASIC0.87□□□□□ -2.27
NKX2-4Q9H2Z4 SNORD77.2-201ENST00000391045 68 ntBASIC0.86□□□□□ -2.27
NKX2-4Q9H2Z4 RNA5SP193-201ENST00000410353 107 ntBASIC0.86□□□□□ -2.27
NKX2-4Q9H2Z4 RNA5SP121-201ENST00000516537 101 ntBASIC0.86□□□□□ -2.27
NKX2-4Q9H2Z4 AC092634.7-201ENST00000621022 103 ntBASIC0.86□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-161P-201ENST00000363051 106 ntBASIC0.85□□□□□ -2.27
NKX2-4Q9H2Z4 RNA5SP62-201ENST00000363457 110 ntBASIC0.85□□□□□ -2.27
NKX2-4Q9H2Z4 SNORA8.2-201ENST00000384372 139 ntBASIC0.85□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.85□□□□□ -2.27
NKX2-4Q9H2Z4 Y_RNA.660-201ENST00000516002 120 ntBASIC0.85□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-1108P-201ENST00000516308 104 ntBASIC0.85□□□□□ -2.27
NKX2-4Q9H2Z4 MIR7107-201ENST00000611489 80 ntBASIC0.85□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-208P-201ENST00000362431 107 ntBASIC0.84□□□□□ -2.27
NKX2-4Q9H2Z4 Y_RNA.264-201ENST00000364665 102 ntBASIC0.84□□□□□ -2.27
NKX2-4Q9H2Z4 RNA5SP517-201ENST00000364724 117 ntBASIC0.84□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-269P-201ENST00000391077 97 ntBASIC0.84□□□□□ -2.27
NKX2-4Q9H2Z4 MIR1255A-201ENST00000408338 113 ntBASIC0.84□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-557P-201ENST00000516842 110 ntBASIC0.84□□□□□ -2.27
NKX2-4Q9H2Z4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.84□□□□□ -2.27
NKX2-4Q9H2Z4 AL162376.1-201ENST00000624117 175 ntBASIC0.84□□□□□ -2.27
NKX2-4Q9H2Z4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.83□□□□□ -2.28
NKX2-4Q9H2Z4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.83□□□□□ -2.28
NKX2-4Q9H2Z4 MIR4711-201ENST00000578274 70 ntBASIC0.83□□□□□ -2.28
NKX2-4Q9H2Z4 MIR1197-201ENST00000408818 88 ntBASIC0.82□□□□□ -2.28
NKX2-4Q9H2Z4 snoU13.17-201ENST00000458802 104 ntBASIC0.82□□□□□ -2.28
NKX2-4Q9H2Z4 MIR330-201ENST00000362196 94 ntBASIC0.81□□□□□ -2.28
NKX2-4Q9H2Z4 RNU6-315P-201ENST00000362666 107 ntBASIC0.81□□□□□ -2.28
NKX2-4Q9H2Z4 RNU6-478P-201ENST00000363904 110 ntBASIC0.81□□□□□ -2.28
NKX2-4Q9H2Z4 RNU6-686P-201ENST00000364839 107 ntBASIC0.81□□□□□ -2.28
NKX2-4Q9H2Z4 RNU6-380P-201ENST00000410207 107 ntBASIC0.81□□□□□ -2.28
NKX2-4Q9H2Z4 SNORD71-201ENST00000411292 86 ntBASIC0.81□□□□□ -2.28
NKX2-4Q9H2Z4 Y_RNA.685-201ENST00000516532 108 ntBASIC0.81□□□□□ -2.28
NKX2-4Q9H2Z4 SNORA40.8-201ENST00000411034 126 ntBASIC0.8□□□□□ -2.28
NKX2-4Q9H2Z4 MIR4460-201ENST00000577862 86 ntBASIC0.8□□□□□ -2.28
NKX2-4Q9H2Z4 MIR4712-201ENST00000583750 82 ntBASIC0.8□□□□□ -2.28
NKX2-4Q9H2Z4 SNORA25.18-201ENST00000607153 114 ntBASIC0.8□□□□□ -2.28
NKX2-4Q9H2Z4 MIR6866-201ENST00000638146 69 ntBASIC0.8□□□□□ -2.28
NKX2-4Q9H2Z4 AC073869.9-201ENST00000641610 120 ntBASIC0.8□□□□□ -2.28
NKX2-4Q9H2Z4 SNORD114-2-201ENST00000363953 78 ntBASIC0.79□□□□□ -2.28
NKX2-4Q9H2Z4 RNU1-141P-201ENST00000364623 158 ntBASIC0.79□□□□□ -2.28
NKX2-4Q9H2Z4 SNORA24B-201ENST00000384176 131 ntBASIC0.79□□□□□ -2.28
NKX2-4Q9H2Z4 RNA5SP395-201ENST00000516567 118 ntBASIC0.79□□□□□ -2.28
NKX2-4Q9H2Z4 RNA5SP347-201ENST00000362445 119 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 RNU6-1177P-201ENST00000391058 104 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 RNA5SP225-201ENST00000410874 135 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 AC093423.1-201ENST00000440817 142 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 RNA5SP484-201ENST00000458857 111 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 AC097510.1-201ENST00000510945 133 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 RNA5SP476-201ENST00000516613 103 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 MIR548O2-201ENST00000616090 70 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 AC243829.3-201ENST00000622177 108 ntBASIC0.78□□□□□ -2.28
NKX2-4Q9H2Z4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 202.5 ms