Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MIR3910-1-201ENST00000580936 111 ntBASIC-0.09□□□□□ -2.42
TNFRSF4P43489 MIR4536-1-201ENST00000583537 88 ntBASIC-0.09□□□□□ -2.42
TNFRSF4P43489 MIR6129-201ENST00000616087 109 ntBASIC-0.09□□□□□ -2.42
TNFRSF4P43489 AC132825.6-201ENST00000638861 357 ntBASIC-0.09□□□□□ -2.42
TNFRSF4P43489 RNU6-22P-201ENST00000384355 107 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 MIR1302-5-201ENST00000408164 150 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 IGLVI-20-201ENST00000519296 130 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 MIR4802-201ENST00000581881 80 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 MIR548Z-201ENST00000584743 97 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 AC012531.4-201ENST00000616509 177 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 MIR1295B-201ENST00000636144 60 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.1□□□□□ -2.43
TNFRSF4P43489 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU6-161P-201ENST00000363051 106 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNA5SP205-201ENST00000364653 136 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU6-302P-201ENST00000365249 107 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU6V-201ENST00000384105 107 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 MIR106A-201ENST00000384870 81 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 MIR451A-201ENST00000385059 72 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 MIR216B-201ENST00000390186 82 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU6-644P-201ENST00000391155 98 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 MIR876-201ENST00000401147 81 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU7-165P-201ENST00000458864 60 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 SCARNA23-201ENST00000516060 130 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU6-313P-201ENST00000516317 112 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 RNU7-188P-201ENST00000517063 64 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 MIR6086-201ENST00000638065 55 ntBASIC-0.11□□□□□ -2.43
TNFRSF4P43489 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.12□□□□□ -2.43
TNFRSF4P43489 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.12□□□□□ -2.43
TNFRSF4P43489 RNU6-154P-201ENST00000384306 106 ntBASIC-0.12□□□□□ -2.43
TNFRSF4P43489 MIR214-201ENST00000385214 110 ntBASIC-0.12□□□□□ -2.43
TNFRSF4P43489 AL603908.1-201ENST00000406098 201 ntBASIC-0.12□□□□□ -2.43
TNFRSF4P43489 RNU6-75P-201ENST00000515944 104 ntBASIC-0.12□□□□□ -2.43
TNFRSF4P43489 MIR548AE1-201ENST00000583292 70 ntBASIC-0.12□□□□□ -2.43
TNFRSF4P43489 MIR4777-201ENST00000583710 86 ntBASIC-0.12□□□□□ -2.43
TNFRSF4P43489 SNORD114-31-201ENST00000363219 75 ntBASIC-0.13□□□□□ -2.43
TNFRSF4P43489 SNORA32.1-201ENST00000364514 115 ntBASIC-0.13□□□□□ -2.43
TNFRSF4P43489 RNU6-756P-201ENST00000383997 107 ntBASIC-0.13□□□□□ -2.43
TNFRSF4P43489 RNU7-85P-201ENST00000458851 63 ntBASIC-0.13□□□□□ -2.43
TNFRSF4P43489 RNU6-904P-201ENST00000516206 101 ntBASIC-0.13□□□□□ -2.43
TNFRSF4P43489 RNU6-180P-201ENST00000516697 61 ntBASIC-0.13□□□□□ -2.43
TNFRSF4P43489 CR383656.4-201ENST00000546909 122 ntBASIC-0.13□□□□□ -2.43
TNFRSF4P43489 MIR1265-201ENST00000408444 86 ntBASIC-0.14□□□□□ -2.43
TNFRSF4P43489 AC104692.1-201ENST00000472406 90 ntBASIC-0.14□□□□□ -2.43
TNFRSF4P43489 RNU6-479P-201ENST00000516348 105 ntBASIC-0.14□□□□□ -2.43
TNFRSF4P43489 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.14□□□□□ -2.43
TNFRSF4P43489 SNORD114-29-201ENST00000364819 70 ntBASIC-0.15□□□□□ -2.43
TNFRSF4P43489 MIR590-201ENST00000385008 97 ntBASIC-0.15□□□□□ -2.43
TNFRSF4P43489 MIR548U-201ENST00000390728 81 ntBASIC-0.15□□□□□ -2.43
TNFRSF4P43489 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.15□□□□□ -2.43
TNFRSF4P43489 RNU6-519P-201ENST00000410590 108 ntBASIC-0.15□□□□□ -2.43
TNFRSF4P43489 Z95118.1-201ENST00000421372 247 ntBASIC-0.15□□□□□ -2.43
TNFRSF4P43489 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.15□□□□□ -2.43
TNFRSF4P43489 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.15□□□□□ -2.43
TNFRSF4P43489 RNU6-834P-201ENST00000362367 110 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 RNU6-554P-201ENST00000410466 106 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 HAR1A.1-201ENST00000459583 118 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 FGF7P7-201ENST00000514120 227 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 RNU6-719P-201ENST00000516671 104 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 MIR4645-201ENST00000583158 77 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 RN7SL660P-201ENST00000614852 299 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 MIR548O2-201ENST00000616090 70 ntBASIC-0.16□□□□□ -2.44
TNFRSF4P43489 MIR148A-201ENST00000362215 68 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 RNA5SP98-201ENST00000363158 137 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 RNU6-132P-201ENST00000383863 107 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 SNORA19-201ENST00000384737 128 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 RNU6-972P-201ENST00000391208 107 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 RNU6-887P-201ENST00000410660 100 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 RNU2-51P-201ENST00000410708 197 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 RNU6-762P-201ENST00000517107 102 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 AP001180.6-201ENST00000584918 159 ntBASIC-0.17□□□□□ -2.44
TNFRSF4P43489 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.18□□□□□ -2.44
TNFRSF4P43489 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.18□□□□□ -2.44
TNFRSF4P43489 RNU6-106P-201ENST00000384405 107 ntBASIC-0.18□□□□□ -2.44
TNFRSF4P43489 U3.27-201ENST00000391237 200 ntBASIC-0.18□□□□□ -2.44
TNFRSF4P43489 RNA5SP25-201ENST00000410815 110 ntBASIC-0.18□□□□□ -2.44
TNFRSF4P43489 SNORD4B-201ENST00000459083 72 ntBASIC-0.18□□□□□ -2.44
TNFRSF4P43489 RNU6-758P-201ENST00000516292 89 ntBASIC-0.18□□□□□ -2.44
TNFRSF4P43489 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.19□□□□□ -2.44
TNFRSF4P43489 SNORD114-12-201ENST00000365400 75 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 RNU6-54P-201ENST00000365563 107 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 RNU6-46P-201ENST00000383860 107 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 RNU6-811P-201ENST00000384069 107 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 MIR652-201ENST00000385278 98 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 RNU7-61P-201ENST00000515897 61 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 RNU6-589P-201ENST00000516485 107 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 MIR3064-201ENST00000581130 66 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 MIR4493-201ENST00000584016 73 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 AC104996.3-201ENST00000590718 94 ntBASIC-0.19□□□□□ -2.44
TNFRSF4P43489 MIR20A-201ENST00000362279 71 ntBASIC-0.2□□□□□ -2.44
TNFRSF4P43489 SNORD114-28-201ENST00000363610 72 ntBASIC-0.2□□□□□ -2.44
TNFRSF4P43489 RNU6-109P-201ENST00000516364 107 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 201.5 ms