Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU1-141P-201ENST00000364623 158 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 RNA5SP205-201ENST00000364653 136 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 SNORA51.5-201ENST00000384126 131 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 Y_RNA.467-201ENST00000384297 102 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 RNU6-476P-201ENST00000384726 107 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 MIR617-201ENST00000385030 97 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 RNA5SP63-201ENST00000391225 112 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 AC006210.1-201ENST00000424882 111 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 MIR6129-201ENST00000616087 109 ntBASIC0.08□□□□□ -2.4
NKX3-1Q99801 Y_RNA.30-201ENST00000362572 97 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 RNU6-509P-201ENST00000363519 107 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 RNA5SP457-201ENST00000363657 124 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 Y_RNA.207-201ENST00000364142 106 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 RNU6-1117P-201ENST00000384525 104 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 AL603908.1-201ENST00000406098 201 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 MIR548H2-201ENST00000408874 88 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 Y_RNA.596-201ENST00000410462 109 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 RNU6-1064P-201ENST00000410626 104 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 AC093423.1-201ENST00000440817 142 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.07□□□□□ -2.4
NKX3-1Q99801 RNU6-795P-201ENST00000516323 103 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 MIR6718-201ENST00000616153 80 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 AC012531.4-201ENST00000616509 177 ntBASIC0.07□□□□□ -2.4
NKX3-1Q99801 Y_RNA.95-201ENST00000363079 95 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 SNORA42.1-201ENST00000363515 137 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 SNORD115-44-201ENST00000365391 82 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 RNU6-62P-201ENST00000516526 102 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 AL513043.2-201ENST00000573941 143 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 MIR4777-201ENST00000583710 86 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 MIR3925-201ENST00000584674 77 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 MIR548AD-201ENST00000584780 82 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 MTRNR2L2-201ENST00000604882 87 ntBASIC0.06□□□□□ -2.4
NKX3-1Q99801 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.05□□□□□ -2.4
NKX3-1Q99801 SNORD45B-201ENST00000364617 72 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 Y_RNA.283-201ENST00000364798 112 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 MIR593-201ENST00000384856 100 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 RNU6-1154P-201ENST00000391001 104 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 RNU7-74P-201ENST00000459104 62 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 RNU6-412P-201ENST00000516434 106 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 MIR4696-201ENST00000581431 70 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 MIR4677-201ENST00000584153 80 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 AC103810.7-201ENST00000607821 91 ntBASIC0.05□□□□□ -2.4
NKX3-1Q99801 SNORD114-5-201ENST00000362928 70 ntBASIC0.04□□□□□ -2.4
NKX3-1Q99801 RNU6-466P-201ENST00000391224 103 ntBASIC0.04□□□□□ -2.4
NKX3-1Q99801 RNU6-75P-201ENST00000515944 104 ntBASIC0.04□□□□□ -2.4
NKX3-1Q99801 RNU6-782P-201ENST00000516852 104 ntBASIC0.04□□□□□ -2.4
NKX3-1Q99801 Y_RNA.125-201ENST00000363371 111 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 RNU4-36P-201ENST00000364294 144 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 RNU6-813P-201ENST00000384691 107 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 SNORA19-201ENST00000384737 128 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 MIR145-201ENST00000384967 88 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 Y_RNA.601-201ENST00000410500 113 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 Y_RNA.648-201ENST00000459455 110 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 RNU6-904P-201ENST00000516206 101 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 MIR4667-201ENST00000578933 66 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.03□□□□□ -2.4
NKX3-1Q99801 RNU6-664P-201ENST00000362381 107 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 SNORD101-201ENST00000384027 73 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 AL606753.1-201ENST00000427435 87 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 RNU7-85P-201ENST00000458851 63 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 RNU6-479P-201ENST00000516348 105 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 RNU5B-6P-201ENST00000516765 68 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 YWHAEP2-201ENST00000580066 112 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 MIR4473-201ENST00000583731 91 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 MIR4439-201ENST00000583746 80 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 U7.6-201ENST00000610841 64 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 MIR2909-201ENST00000617113 69 ntBASIC0.02□□□□□ -2.41
NKX3-1Q99801 RNU6-161P-201ENST00000363051 106 ntBASIC0.01□□□□□ -2.41
NKX3-1Q99801 MIR610-201ENST00000385139 96 ntBASIC0.01□□□□□ -2.41
NKX3-1Q99801 RNU6-313P-201ENST00000516317 112 ntBASIC0.01□□□□□ -2.41
NKX3-1Q99801 MIR4460-201ENST00000577862 86 ntBASIC0.01□□□□□ -2.41
NKX3-1Q99801 SNORD114-16-201ENST00000363044 70 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 SNORD113-1-201ENST00000365321 69 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 RNU6-652P-201ENST00000365488 107 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 RNU6-1056P-201ENST00000383996 107 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 RNU6-106P-201ENST00000384405 107 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 MIR590-201ENST00000385008 97 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 RNU6-554P-201ENST00000410466 106 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0□□□□□ -2.41
NKX3-1Q99801 SNORA25.13-201ENST00000516395 103 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 RNU6-589P-201ENST00000516485 107 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 SCARNA11.2-201ENST00000517183 154 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 RNU6-537P-201ENST00000517277 103 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 AC069503.3-201ENST00000618674 145 ntBASIC0□□□□□ -2.41
NKX3-1Q99801 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.01□□□□□ -2.41
NKX3-1Q99801 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.01□□□□□ -2.41
NKX3-1Q99801 RNA5SP257-201ENST00000363023 116 ntBASIC-0.01□□□□□ -2.41
NKX3-1Q99801 SCARNA23-201ENST00000516060 130 ntBASIC-0.01□□□□□ -2.41
NKX3-1Q99801 MIR5190-201ENST00000581537 80 ntBASIC-0.01□□□□□ -2.41
NKX3-1Q99801 MIR548AE1-201ENST00000583292 70 ntBASIC-0.01□□□□□ -2.41
NKX3-1Q99801 MIR4536-1-201ENST00000583537 88 ntBASIC-0.01□□□□□ -2.41
NKX3-1Q99801 MIR4768-201ENST00000585270 74 ntBASIC-0.01□□□□□ -2.41
NKX3-1Q99801 MIR516B1-201ENST00000385211 90 ntBASIC-0.02□□□□□ -2.41
NKX3-1Q99801 MT-TY-201ENST00000387409 66 ntBASIC-0.02□□□□□ -2.41
NKX3-1Q99801 RNU6-644P-201ENST00000391155 98 ntBASIC-0.02□□□□□ -2.41
NKX3-1Q99801 MIR1302-5-201ENST00000408164 150 ntBASIC-0.02□□□□□ -2.41
NKX3-1Q99801 RNU6-109P-201ENST00000516364 107 ntBASIC-0.02□□□□□ -2.41
NKX3-1Q99801 RNU6-184P-201ENST00000516514 107 ntBASIC-0.02□□□□□ -2.41
NKX3-1Q99801 RNU6-756P-201ENST00000383997 107 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms