Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU6-554P-201ENST00000410466 106 ntBASIC0.94□□□□□ -2.26
SMARCA1P28370 AC004941.2-201ENST00000427009 228 ntBASIC0.94□□□□□ -2.26
SMARCA1P28370 MIR4698-201ENST00000577795 80 ntBASIC0.94□□□□□ -2.26
SMARCA1P28370 MIR3612-201ENST00000579753 87 ntBASIC0.94□□□□□ -2.26
SMARCA1P28370 uc_338.28-201ENST00000612082 187 ntBASIC0.94□□□□□ -2.26
SMARCA1P28370 SNORD114-2-201ENST00000363953 78 ntBASIC0.93□□□□□ -2.26
SMARCA1P28370 RNA5SP245-201ENST00000364239 121 ntBASIC0.93□□□□□ -2.26
SMARCA1P28370 RNU6-535P-201ENST00000384722 107 ntBASIC0.93□□□□□ -2.26
SMARCA1P28370 MIR193B-201ENST00000384907 83 ntBASIC0.93□□□□□ -2.26
SMARCA1P28370 SNORA19.1-201ENST00000410656 129 ntBASIC0.93□□□□□ -2.26
SMARCA1P28370 RNA5SP436-201ENST00000516020 115 ntBASIC0.93□□□□□ -2.26
SMARCA1P28370 AC141557.1-201ENST00000540982 400 ntBASIC0.93□□□□□ -2.26
SMARCA1P28370 MIR101-2-201ENST00000362195 79 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 Y_RNA.32-201ENST00000362589 110 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 AL035461.1-201ENST00000421490 332 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 SPINT5P-201ENST00000448174 155 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 SNRPGP12-201ENST00000449481 213 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 PSMC1P5-201ENST00000512850 177 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 MTND5P40-201ENST00000559945 246 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 CYP3A137P-201ENST00000562436 69 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 uc_338.16-201ENST00000621804 95 ntBASIC0.92□□□□□ -2.26
SMARCA1P28370 Y_RNA.56-201ENST00000362798 112 ntBASIC0.91□□□□□ -2.26
SMARCA1P28370 Y_RNA.178-201ENST00000363832 102 ntBASIC0.91□□□□□ -2.26
SMARCA1P28370 SNORD38.2-201ENST00000384470 69 ntBASIC0.91□□□□□ -2.26
SMARCA1P28370 MIR146A-201ENST00000385201 99 ntBASIC0.91□□□□□ -2.26
SMARCA1P28370 MIR548G-201ENST00000408442 89 ntBASIC0.91□□□□□ -2.26
SMARCA1P28370 SNORA31.14-201ENST00000516728 116 ntBASIC0.91□□□□□ -2.26
SMARCA1P28370 RNU6-90P-201ENST00000606352 106 ntBASIC0.91□□□□□ -2.26
SMARCA1P28370 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.91□□□□□ -2.26
SMARCA1P28370 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
SMARCA1P28370 SNORA63.4-201ENST00000362763 126 ntBASIC0.9□□□□□ -2.27
SMARCA1P28370 RNU6-44P-201ENST00000384045 107 ntBASIC0.9□□□□□ -2.27
SMARCA1P28370 MIR1302-5-201ENST00000408164 150 ntBASIC0.9□□□□□ -2.27
SMARCA1P28370 RNU6-904P-201ENST00000516206 101 ntBASIC0.9□□□□□ -2.27
SMARCA1P28370 RNU6-850P-201ENST00000516934 103 ntBASIC0.9□□□□□ -2.27
SMARCA1P28370 Y_RNA.173-201ENST00000363776 113 ntBASIC0.89□□□□□ -2.27
SMARCA1P28370 RNU6-755P-201ENST00000364400 103 ntBASIC0.89□□□□□ -2.27
SMARCA1P28370 RNA5SP117-201ENST00000365294 118 ntBASIC0.89□□□□□ -2.27
SMARCA1P28370 RNU6-571P-201ENST00000384128 107 ntBASIC0.89□□□□□ -2.27
SMARCA1P28370 AC092628.1-201ENST00000436250 252 ntBASIC0.89□□□□□ -2.27
SMARCA1P28370 MIR1273G-201ENST00000577677 100 ntBASIC0.89□□□□□ -2.27
SMARCA1P28370 MIR18A-201ENST00000362310 71 ntBASIC0.88□□□□□ -2.27
SMARCA1P28370 Y_RNA.78-201ENST00000362970 110 ntBASIC0.88□□□□□ -2.27
SMARCA1P28370 RNU6-1163P-201ENST00000364516 107 ntBASIC0.88□□□□□ -2.27
SMARCA1P28370 RNU6-110P-201ENST00000384508 104 ntBASIC0.88□□□□□ -2.27
SMARCA1P28370 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
SMARCA1P28370 TRAJ51-201ENST00000504127 63 ntBASIC0.88□□□□□ -2.27
SMARCA1P28370 RNU6-537P-201ENST00000517277 103 ntBASIC0.88□□□□□ -2.27
SMARCA1P28370 MIR548H5-201ENST00000580314 60 ntBASIC0.88□□□□□ -2.27
SMARCA1P28370 AC096720.1-201ENST00000604441 183 ntBASIC0.88□□□□□ -2.27
SMARCA1P28370 RNU4-36P-201ENST00000364294 144 ntBASIC0.87□□□□□ -2.27
SMARCA1P28370 MIR644A-201ENST00000385262 94 ntBASIC0.87□□□□□ -2.27
SMARCA1P28370 RNA5SP222-201ENST00000411039 105 ntBASIC0.87□□□□□ -2.27
SMARCA1P28370 AC109327.2-201ENST00000448339 378 ntBASIC0.87□□□□□ -2.27
SMARCA1P28370 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.87□□□□□ -2.27
SMARCA1P28370 Y_RNA.659-201ENST00000515994 113 ntBASIC0.87□□□□□ -2.27
SMARCA1P28370 AL590095.2-201ENST00000604136 117 ntBASIC0.87□□□□□ -2.27
SMARCA1P28370 AC091304.10-201ENST00000641554 121 ntBASIC0.87□□□□□ -2.27
SMARCA1P28370 RNU6-170P-201ENST00000362832 104 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 SNORA51.5-201ENST00000384126 131 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 MIR635-201ENST00000384830 98 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 MIR590-201ENST00000385008 97 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 Y_RNA.601-201ENST00000410500 113 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 RNU7-106P-201ENST00000459514 67 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 MIR548Z-201ENST00000584743 97 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 MIR6866-201ENST00000638146 69 ntBASIC0.86□□□□□ -2.27
SMARCA1P28370 Y_RNA.174-201ENST00000363781 105 ntBASIC0.85□□□□□ -2.27
SMARCA1P28370 RNY1P8-201ENST00000383970 114 ntBASIC0.85□□□□□ -2.27
SMARCA1P28370 RNU6-756P-201ENST00000383997 107 ntBASIC0.85□□□□□ -2.27
SMARCA1P28370 Y_RNA.567-201ENST00000384736 106 ntBASIC0.85□□□□□ -2.27
SMARCA1P28370 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.85□□□□□ -2.27
SMARCA1P28370 MIR3678-201ENST00000578455 94 ntBASIC0.85□□□□□ -2.27
SMARCA1P28370 MIR450A1-201ENST00000362262 91 ntBASIC0.84□□□□□ -2.27
SMARCA1P28370 Y_RNA.342-201ENST00000365352 113 ntBASIC0.84□□□□□ -2.27
SMARCA1P28370 SNORD63B-201ENST00000411005 70 ntBASIC0.84□□□□□ -2.27
SMARCA1P28370 RNU6-795P-201ENST00000516323 103 ntBASIC0.84□□□□□ -2.27
SMARCA1P28370 AC138907.6-201ENST00000568401 126 ntBASIC0.84□□□□□ -2.27
SMARCA1P28370 AC138869.1-201ENST00000568623 124 ntBASIC0.84□□□□□ -2.27
SMARCA1P28370 RNU7-10P-201ENST00000607194 63 ntBASIC0.84□□□□□ -2.27
SMARCA1P28370 AC012531.4-201ENST00000616509 177 ntBASIC0.84□□□□□ -2.27
SMARCA1P28370 Y_RNA.10-201ENST00000362371 110 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 SNORD45B-201ENST00000364617 72 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 MIR516A2-201ENST00000384888 90 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 MIR516A1-201ENST00000385033 90 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 AL031737.1-201ENST00000450125 223 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 SCARNA23-201ENST00000516060 130 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 RNU6-109P-201ENST00000516364 107 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 RNU6-184P-201ENST00000516514 107 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 MIR4777-201ENST00000583710 86 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 RNU6-86P-201ENST00000606534 107 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 MIR6835-201ENST00000621552 64 ntBASIC0.83□□□□□ -2.28
SMARCA1P28370 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.83□□□□□ -2.28
SMARCA1P28370 RNU6-766P-201ENST00000362478 107 ntBASIC0.82□□□□□ -2.28
SMARCA1P28370 Y_RNA.95-201ENST00000363079 95 ntBASIC0.82□□□□□ -2.28
SMARCA1P28370 RNU6-1113P-201ENST00000384348 107 ntBASIC0.82□□□□□ -2.28
SMARCA1P28370 AL606490.4-201ENST00000423117 127 ntBASIC0.82□□□□□ -2.28
SMARCA1P28370 AC244505.6-201ENST00000452829 130 ntBASIC0.82□□□□□ -2.28
SMARCA1P28370 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.81□□□□□ -2.28
SMARCA1P28370 Y_RNA.115-201ENST00000363272 98 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 174.6 ms