Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNU6-355P-201ENST00000410427 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNU6-791P-201ENST00000410467 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNU6-705P-201ENST00000410601 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNU6-1100P-201ENST00000410691 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNU6-860P-201ENST00000410860 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNU4-83P-201ENST00000410863 133 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNU6-1217P-201ENST00000411276 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNU6-785P-201ENST00000411324 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 U7.7-201ENST00000459276 60 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNA5SP255-201ENST00000516370 107 ntBASIC0.95□□□□□ -2.26
CIITAP33076 RNU7-156P-201ENST00000517214 74 ntBASIC0.95□□□□□ -2.26
CIITAP33076 U6.90-201ENST00000614007 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 U6.70-201ENST00000620287 104 ntBASIC0.95□□□□□ -2.26
CIITAP33076 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
CIITAP33076 Y_RNA.13-201ENST00000362403 112 ntBASIC0.94□□□□□ -2.26
CIITAP33076 Y_RNA.309-201ENST00000365046 111 ntBASIC0.94□□□□□ -2.26
CIITAP33076 Y_RNA.360-201ENST00000365512 102 ntBASIC0.94□□□□□ -2.26
CIITAP33076 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.94□□□□□ -2.26
CIITAP33076 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.94□□□□□ -2.26
CIITAP33076 RNU6-351P-201ENST00000516097 100 ntBASIC0.94□□□□□ -2.26
CIITAP33076 RNU6-977P-201ENST00000516411 103 ntBASIC0.94□□□□□ -2.26
CIITAP33076 RNU6-1018P-201ENST00000516577 106 ntBASIC0.94□□□□□ -2.26
CIITAP33076 AC133485.1-201ENST00000567176 124 ntBASIC0.94□□□□□ -2.26
CIITAP33076 MIR3613-201ENST00000579844 87 ntBASIC0.94□□□□□ -2.26
CIITAP33076 MIR6082-201ENST00000613604 109 ntBASIC0.94□□□□□ -2.26
CIITAP33076 U6.109-201ENST00000636749 87 ntBASIC0.94□□□□□ -2.26
CIITAP33076 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.93□□□□□ -2.26
CIITAP33076 RNU6-1313P-201ENST00000362622 102 ntBASIC0.93□□□□□ -2.26
CIITAP33076 RNU6-403P-201ENST00000363163 104 ntBASIC0.93□□□□□ -2.26
CIITAP33076 Y_RNA.247-201ENST00000364500 92 ntBASIC0.93□□□□□ -2.26
CIITAP33076 Y_RNA.374-201ENST00000365606 101 ntBASIC0.93□□□□□ -2.26
CIITAP33076 RNU6-1014P-201ENST00000383940 103 ntBASIC0.93□□□□□ -2.26
CIITAP33076 RNU6-409P-201ENST00000384114 104 ntBASIC0.93□□□□□ -2.26
CIITAP33076 Y_RNA.507-201ENST00000384500 99 ntBASIC0.93□□□□□ -2.26
CIITAP33076 RNY1P4-201ENST00000384595 115 ntBASIC0.93□□□□□ -2.26
CIITAP33076 MIR577-201ENST00000385196 96 ntBASIC0.93□□□□□ -2.26
CIITAP33076 MIR938-201ENST00000401216 83 ntBASIC0.93□□□□□ -2.26
CIITAP33076 RNU6-733P-201ENST00000410759 104 ntBASIC0.93□□□□□ -2.26
CIITAP33076 RPL39P25-201ENST00000449384 154 ntBASIC0.93□□□□□ -2.26
CIITAP33076 RNU7-102P-201ENST00000458948 62 ntBASIC0.93□□□□□ -2.26
CIITAP33076 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.93□□□□□ -2.26
CIITAP33076 Y_RNA.98-201ENST00000363109 102 ntBASIC0.92□□□□□ -2.26
CIITAP33076 Y_RNA.119-201ENST00000363301 96 ntBASIC0.92□□□□□ -2.26
CIITAP33076 Y_RNA.155-201ENST00000363632 101 ntBASIC0.92□□□□□ -2.26
CIITAP33076 RNU6-1201P-201ENST00000384227 107 ntBASIC0.92□□□□□ -2.26
CIITAP33076 RNU6-106P-201ENST00000384405 107 ntBASIC0.92□□□□□ -2.26
CIITAP33076 MIR520F-201ENST00000384824 87 ntBASIC0.92□□□□□ -2.26
CIITAP33076 AC067940.1-201ENST00000458411 300 ntBASIC0.92□□□□□ -2.26
CIITAP33076 RPL39P28-201ENST00000465655 155 ntBASIC0.92□□□□□ -2.26
CIITAP33076 RNU6-531P-201ENST00000516694 104 ntBASIC0.92□□□□□ -2.26
CIITAP33076 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.92□□□□□ -2.26
CIITAP33076 AP001362.1-201ENST00000625165 124 ntBASIC0.92□□□□□ -2.26
CIITAP33076 Y_RNA.49-201ENST00000362714 112 ntBASIC0.91□□□□□ -2.26
CIITAP33076 RNU6-1099P-201ENST00000363533 107 ntBASIC0.91□□□□□ -2.26
CIITAP33076 SNORD114-2-201ENST00000363953 78 ntBASIC0.91□□□□□ -2.26
CIITAP33076 SNORD105-201ENST00000386910 85 ntBASIC0.91□□□□□ -2.26
CIITAP33076 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.91□□□□□ -2.26
CIITAP33076 AC004941.2-201ENST00000427009 228 ntBASIC0.91□□□□□ -2.26
CIITAP33076 RNU6-412P-201ENST00000516434 106 ntBASIC0.91□□□□□ -2.26
CIITAP33076 RNU6-919P-201ENST00000516731 104 ntBASIC0.91□□□□□ -2.26
CIITAP33076 AL136317.1-201ENST00000612653 226 ntBASIC0.91□□□□□ -2.26
CIITAP33076 RNU6-865P-201ENST00000364772 107 ntBASIC0.9□□□□□ -2.27
CIITAP33076 RNU6-554P-201ENST00000410466 106 ntBASIC0.9□□□□□ -2.27
CIITAP33076 AC090897.1-201ENST00000580909 226 ntBASIC0.9□□□□□ -2.27
CIITAP33076 AC013244.2-201ENST00000603396 103 ntBASIC0.9□□□□□ -2.27
CIITAP33076 RNU6-755P-201ENST00000364400 103 ntBASIC0.89□□□□□ -2.27
CIITAP33076 RNU6-44P-201ENST00000384045 107 ntBASIC0.89□□□□□ -2.27
CIITAP33076 RNU6-364P-201ENST00000384387 107 ntBASIC0.89□□□□□ -2.27
CIITAP33076 MIR520H-201ENST00000385126 88 ntBASIC0.89□□□□□ -2.27
CIITAP33076 SNORA19.1-201ENST00000410656 129 ntBASIC0.89□□□□□ -2.27
CIITAP33076 AL035461.1-201ENST00000421490 332 ntBASIC0.89□□□□□ -2.27
CIITAP33076 ACA64.5-201ENST00000516207 127 ntBASIC0.89□□□□□ -2.27
CIITAP33076 RNU6-765P-201ENST00000516916 99 ntBASIC0.89□□□□□ -2.27
CIITAP33076 MIR4694-201ENST00000578534 80 ntBASIC0.89□□□□□ -2.27
CIITAP33076 AC025627.3-201ENST00000582078 182 ntBASIC0.89□□□□□ -2.27
CIITAP33076 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
CIITAP33076 HSBP1P2-201ENST00000299671 229 ntBASIC0.88□□□□□ -2.27
CIITAP33076 RNU6-832P-201ENST00000363319 107 ntBASIC0.88□□□□□ -2.27
CIITAP33076 Y_RNA.377-201ENST00000365644 108 ntBASIC0.88□□□□□ -2.27
CIITAP33076 SNORA72.6-201ENST00000384520 129 ntBASIC0.88□□□□□ -2.27
CIITAP33076 MIR608-201ENST00000384820 100 ntBASIC0.88□□□□□ -2.27
CIITAP33076 MIR193B-201ENST00000384907 83 ntBASIC0.88□□□□□ -2.27
CIITAP33076 RNU1-119P-201ENST00000391122 165 ntBASIC0.88□□□□□ -2.27
CIITAP33076 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.88□□□□□ -2.27
CIITAP33076 CYP3A137P-201ENST00000562436 69 ntBASIC0.88□□□□□ -2.27
CIITAP33076 MIR4500-201ENST00000579472 76 ntBASIC0.88□□□□□ -2.27
CIITAP33076 uc_338.28-201ENST00000612082 187 ntBASIC0.88□□□□□ -2.27
CIITAP33076 AL442128.1-201ENST00000615151 90 ntBASIC0.88□□□□□ -2.27
CIITAP33076 AL512310.12-203ENST00000640543 90 ntBASIC0.88□□□□□ -2.27
CIITAP33076 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CIITAP33076 RNY3P2-201ENST00000362918 102 ntBASIC0.87□□□□□ -2.27
CIITAP33076 RNU4-58P-201ENST00000363192 141 ntBASIC0.87□□□□□ -2.27
CIITAP33076 Y_RNA.163-201ENST00000363702 113 ntBASIC0.87□□□□□ -2.27
CIITAP33076 RNU6-1194P-201ENST00000516208 104 ntBASIC0.87□□□□□ -2.27
CIITAP33076 RNU6-537P-201ENST00000517277 103 ntBASIC0.87□□□□□ -2.27
CIITAP33076 MIR4653-201ENST00000585107 83 ntBASIC0.87□□□□□ -2.27
CIITAP33076 SNORA63.4-201ENST00000362763 126 ntBASIC0.86□□□□□ -2.27
CIITAP33076 SNORD99-201ENST00000408612 74 ntBASIC0.86□□□□□ -2.27
CIITAP33076 RNU6-291P-201ENST00000384720 107 ntBASIC0.85□□□□□ -2.27
CIITAP33076 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 884.5 ms