Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 Y_RNA.327-201ENST00000365201 102 ntBASIC1.55□□□□□ -2.16
TRAIPQ9BWF2 Y_RNA.328-201ENST00000365208 113 ntBASIC1.55□□□□□ -2.16
TRAIPQ9BWF2 SNORD38.2-201ENST00000384470 69 ntBASIC1.55□□□□□ -2.16
TRAIPQ9BWF2 RNA5SP247-201ENST00000411181 105 ntBASIC1.55□□□□□ -2.16
TRAIPQ9BWF2 UBL5P1-201ENST00000507979 193 ntBASIC1.55□□□□□ -2.16
TRAIPQ9BWF2 RNA5SP255-201ENST00000516370 107 ntBASIC1.55□□□□□ -2.16
TRAIPQ9BWF2 AP001362.1-201ENST00000625165 124 ntBASIC1.55□□□□□ -2.16
TRAIPQ9BWF2 MIR1255B1-201ENST00000636325 63 ntBASIC1.55□□□□□ -2.16
TRAIPQ9BWF2 Y_RNA.85-201ENST00000363014 111 ntBASIC1.54□□□□□ -2.16
TRAIPQ9BWF2 RNY1P2-201ENST00000364820 117 ntBASIC1.54□□□□□ -2.16
TRAIPQ9BWF2 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.54□□□□□ -2.16
TRAIPQ9BWF2 Y_RNA.226-201ENST00000364337 114 ntBASIC1.53□□□□□ -2.16
TRAIPQ9BWF2 MIR520H-201ENST00000385126 88 ntBASIC1.53□□□□□ -2.16
TRAIPQ9BWF2 RNU6-733P-201ENST00000410759 104 ntBASIC1.53□□□□□ -2.16
TRAIPQ9BWF2 SNORD92-201ENST00000585078 85 ntBASIC1.53□□□□□ -2.16
TRAIPQ9BWF2 AL157834.3-201ENST00000615543 103 ntBASIC1.53□□□□□ -2.16
TRAIPQ9BWF2 MIR8070-201ENST00000616510 88 ntBASIC1.53□□□□□ -2.16
TRAIPQ9BWF2 RMST_2.1-201ENST00000617263 136 ntBASIC1.53□□□□□ -2.16
TRAIPQ9BWF2 RNU7-56P-201ENST00000458744 62 ntBASIC1.52□□□□□ -2.17
TRAIPQ9BWF2 RNU7-102P-201ENST00000458948 62 ntBASIC1.52□□□□□ -2.17
TRAIPQ9BWF2 RNU1-92P-201ENST00000517017 135 ntBASIC1.52□□□□□ -2.17
TRAIPQ9BWF2 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.52□□□□□ -2.17
TRAIPQ9BWF2 MIR6082-201ENST00000613604 109 ntBASIC1.52□□□□□ -2.17
TRAIPQ9BWF2 AL353770.2-201ENST00000620024 78 ntBASIC1.52□□□□□ -2.17
TRAIPQ9BWF2 Y_RNA.35-201ENST00000362601 101 ntBASIC1.51□□□□□ -2.17
TRAIPQ9BWF2 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.51□□□□□ -2.17
TRAIPQ9BWF2 MIR101-2-201ENST00000362195 79 ntBASIC1.5□□□□□ -2.17
TRAIPQ9BWF2 Y_RNA.13-201ENST00000362403 112 ntBASIC1.5□□□□□ -2.17
TRAIPQ9BWF2 Y_RNA.119-201ENST00000363301 96 ntBASIC1.5□□□□□ -2.17
TRAIPQ9BWF2 Y_RNA.588-201ENST00000391254 102 ntBASIC1.5□□□□□ -2.17
TRAIPQ9BWF2 AC004941.2-201ENST00000427009 228 ntBASIC1.5□□□□□ -2.17
TRAIPQ9BWF2 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
TRAIPQ9BWF2 AL035470.1-201ENST00000622571 220 ntBASIC1.5□□□□□ -2.17
TRAIPQ9BWF2 RNU6-369P-201ENST00000362515 102 ntBASIC1.49□□□□□ -2.17
TRAIPQ9BWF2 SNORA25.16-201ENST00000516741 121 ntBASIC1.49□□□□□ -2.17
TRAIPQ9BWF2 RNU6-765P-201ENST00000516916 99 ntBASIC1.49□□□□□ -2.17
TRAIPQ9BWF2 AC068339.1-201ENST00000526965 141 ntBASIC1.49□□□□□ -2.17
TRAIPQ9BWF2 AC138749.4-201ENST00000563970 127 ntBASIC1.49□□□□□ -2.17
TRAIPQ9BWF2 MIR7974-201ENST00000615835 79 ntBASIC1.49□□□□□ -2.17
TRAIPQ9BWF2 MIR6129-201ENST00000616087 109 ntBASIC1.49□□□□□ -2.17
TRAIPQ9BWF2 RNU6-1290P-201ENST00000362957 109 ntBASIC1.48□□□□□ -2.17
TRAIPQ9BWF2 Y_RNA.281-201ENST00000364774 94 ntBASIC1.48□□□□□ -2.17
TRAIPQ9BWF2 Y_RNA.549-201ENST00000384657 102 ntBASIC1.48□□□□□ -2.17
TRAIPQ9BWF2 RNA5SP61-201ENST00000516453 100 ntBASIC1.48□□□□□ -2.17
TRAIPQ9BWF2 RNU6-1018P-201ENST00000516577 106 ntBASIC1.48□□□□□ -2.17
TRAIPQ9BWF2 MIR499A-201ENST00000384903 122 ntBASIC1.47□□□□□ -2.17
TRAIPQ9BWF2 RNU6-1194P-201ENST00000516208 104 ntBASIC1.47□□□□□ -2.17
TRAIPQ9BWF2 RNU6-531P-201ENST00000516694 104 ntBASIC1.47□□□□□ -2.17
TRAIPQ9BWF2 MIR4500-201ENST00000579472 76 ntBASIC1.47□□□□□ -2.17
TRAIPQ9BWF2 RNU6-429P-201ENST00000384582 108 ntBASIC1.46□□□□□ -2.18
TRAIPQ9BWF2 MIR1287-201ENST00000408492 90 ntBASIC1.46□□□□□ -2.18
TRAIPQ9BWF2 OR2A41P-201ENST00000473586 105 ntBASIC1.46□□□□□ -2.18
TRAIPQ9BWF2 Y_RNA.697-201ENST00000516776 113 ntBASIC1.46□□□□□ -2.18
TRAIPQ9BWF2 AC096720.1-201ENST00000604441 183 ntBASIC1.46□□□□□ -2.18
TRAIPQ9BWF2 SNORA40.6-201ENST00000391153 128 ntBASIC1.45□□□□□ -2.18
TRAIPQ9BWF2 MIR1276-201ENST00000408707 83 ntBASIC1.45□□□□□ -2.18
TRAIPQ9BWF2 RNU1-123P-201ENST00000458950 160 ntBASIC1.45□□□□□ -2.18
TRAIPQ9BWF2 AC004223.1-201ENST00000479840 271 ntBASIC1.45□□□□□ -2.18
TRAIPQ9BWF2 RNU6-448P-201ENST00000517052 107 ntBASIC1.45□□□□□ -2.18
TRAIPQ9BWF2 AP003327.1-201ENST00000529684 127 ntBASIC1.45□□□□□ -2.18
TRAIPQ9BWF2 MIR8066-201ENST00000617280 78 ntBASIC1.45□□□□□ -2.18
TRAIPQ9BWF2 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.45□□□□□ -2.18
TRAIPQ9BWF2 Y_RNA.42-201ENST00000362660 108 ntBASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 RNU6-1107P-201ENST00000364817 104 ntBASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 U8.6-201ENST00000364939 135 ntBASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 Y_RNA.360-201ENST00000365512 102 ntBASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 SNORD99-201ENST00000408612 74 ntBASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 AC096949.1-201ENST00000412047 152 ntBASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 MIR5009-201ENST00000578736 100 ntBASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 MIR376B-201ENST00000614515 100 ntBASIC1.44□□□□□ -2.18
TRAIPQ9BWF2 SNORA25.9-201ENST00000365087 128 ntBASIC1.43□□□□□ -2.18
TRAIPQ9BWF2 RNA5SP117-201ENST00000365294 118 ntBASIC1.43□□□□□ -2.18
TRAIPQ9BWF2 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
TRAIPQ9BWF2 MTND5P40-201ENST00000559945 246 ntBASIC1.43□□□□□ -2.18
TRAIPQ9BWF2 AC090897.1-201ENST00000580909 226 ntBASIC1.43□□□□□ -2.18
TRAIPQ9BWF2 RNU6-1325P-201ENST00000364905 105 ntBASIC1.42□□□□□ -2.18
TRAIPQ9BWF2 MIR758-201ENST00000390227 88 ntBASIC1.42□□□□□ -2.18
TRAIPQ9BWF2 AC013244.2-201ENST00000603396 103 ntBASIC1.42□□□□□ -2.18
TRAIPQ9BWF2 RNU7-10P-201ENST00000607194 63 ntBASIC1.42□□□□□ -2.18
TRAIPQ9BWF2 RNU6-1313P-201ENST00000362622 102 ntBASIC1.41□□□□□ -2.18
TRAIPQ9BWF2 MIR34C-201ENST00000384831 77 ntBASIC1.41□□□□□ -2.18
TRAIPQ9BWF2 AC011195.1-201ENST00000578177 177 ntBASIC1.41□□□□□ -2.18
TRAIPQ9BWF2 AC008608.1-201ENST00000603910 127 ntBASIC1.41□□□□□ -2.18
TRAIPQ9BWF2 Y_RNA.116-201ENST00000363292 103 ntBASIC1.4□□□□□ -2.19
TRAIPQ9BWF2 RNU6-1335P-201ENST00000365426 107 ntBASIC1.4□□□□□ -2.19
TRAIPQ9BWF2 MIR605-201ENST00000385078 83 ntBASIC1.4□□□□□ -2.19
TRAIPQ9BWF2 RNU6-679P-201ENST00000391003 106 ntBASIC1.4□□□□□ -2.19
TRAIPQ9BWF2 RNU6-1307P-201ENST00000391012 103 ntBASIC1.4□□□□□ -2.19
TRAIPQ9BWF2 MIR1302-5-201ENST00000408164 150 ntBASIC1.4□□□□□ -2.19
TRAIPQ9BWF2 MIR6078-201ENST00000611069 100 ntBASIC1.4□□□□□ -2.19
TRAIPQ9BWF2 MIR6504-201ENST00000613520 61 ntBASIC1.4□□□□□ -2.19
TRAIPQ9BWF2 RNU6-1014P-201ENST00000383940 103 ntBASIC1.39□□□□□ -2.19
TRAIPQ9BWF2 AC068338.1-201ENST00000565567 176 ntBASIC1.39□□□□□ -2.19
TRAIPQ9BWF2 AL353765.1-201ENST00000605514 183 ntBASIC1.39□□□□□ -2.19
TRAIPQ9BWF2 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.38□□□□□ -2.19
TRAIPQ9BWF2 SNORD38.1-201ENST00000363863 68 ntBASIC1.38□□□□□ -2.19
TRAIPQ9BWF2 Y_RNA.323-201ENST00000365157 109 ntBASIC1.38□□□□□ -2.19
TRAIPQ9BWF2 MIR573-201ENST00000384964 99 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms