Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.44□□□□□ -2.48
CCDC43Q96MW1 SNORD4A-201ENST00000459174 72 ntBASIC-0.44□□□□□ -2.48
CCDC43Q96MW1 RNU6-180P-201ENST00000516697 61 ntBASIC-0.44□□□□□ -2.48
CCDC43Q96MW1 Y_RNA.701-201ENST00000516812 110 ntBASIC-0.44□□□□□ -2.48
CCDC43Q96MW1 uc_338.28-201ENST00000612082 187 ntBASIC-0.44□□□□□ -2.48
CCDC43Q96MW1 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 Y_RNA.182-201ENST00000363880 111 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 RNU6-690P-201ENST00000365242 106 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 SNORD114-12-201ENST00000365400 75 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 RNU6-46P-201ENST00000383860 107 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 RNU6-35P-201ENST00000384530 107 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 Y_RNA.518-201ENST00000384552 113 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 SNORD41.1-201ENST00000391000 69 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 RNU2-35P-201ENST00000516446 142 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 AP001180.6-201ENST00000584918 159 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 RNU7-10P-201ENST00000607194 63 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 AC073869.9-201ENST00000641610 120 ntBASIC-0.45□□□□□ -2.48
CCDC43Q96MW1 SNORA18.1-201ENST00000363418 128 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 RNU6-472P-201ENST00000384299 107 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 Y_RNA.521-201ENST00000384560 114 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 MIR635-201ENST00000384830 98 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 MIR106A-201ENST00000384870 81 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 HMGN2P22-201ENST00000427588 175 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 TRAJ51-201ENST00000504127 63 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 RNA5SP236-201ENST00000516169 116 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 RNU2-60P-201ENST00000517290 128 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 MIR4500-201ENST00000579472 76 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 MIR4636-201ENST00000582271 80 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 AL670379.3-201ENST00000605040 251 ntBASIC-0.46□□□□□ -2.48
CCDC43Q96MW1 Y_RNA.274-201ENST00000364714 101 ntBASIC-0.47□□□□□ -2.48
CCDC43Q96MW1 RNY4P28-201ENST00000365281 93 ntBASIC-0.47□□□□□ -2.48
CCDC43Q96MW1 MIR1265-201ENST00000408444 86 ntBASIC-0.47□□□□□ -2.48
CCDC43Q96MW1 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.47□□□□□ -2.48
CCDC43Q96MW1 RNU6-320P-201ENST00000516511 106 ntBASIC-0.47□□□□□ -2.48
CCDC43Q96MW1 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.47□□□□□ -2.48
CCDC43Q96MW1 AC044792.1-201ENST00000593294 196 ntBASIC-0.47□□□□□ -2.48
CCDC43Q96MW1 Y_RNA.571-201ENST00000384753 98 ntBASIC-0.48□□□□□ -2.49
CCDC43Q96MW1 MIR599-201ENST00000385069 95 ntBASIC-0.48□□□□□ -2.49
CCDC43Q96MW1 MIR1270-201ENST00000459320 83 ntBASIC-0.48□□□□□ -2.49
CCDC43Q96MW1 MTND1P19-201ENST00000511780 315 ntBASIC-0.48□□□□□ -2.49
CCDC43Q96MW1 RNU6-758P-201ENST00000516292 89 ntBASIC-0.48□□□□□ -2.49
CCDC43Q96MW1 AP001094.1-201ENST00000579805 193 ntBASIC-0.48□□□□□ -2.49
CCDC43Q96MW1 MIR4802-201ENST00000581881 80 ntBASIC-0.48□□□□□ -2.49
CCDC43Q96MW1 MIR6514-201ENST00000622549 70 ntBASIC-0.48□□□□□ -2.49
CCDC43Q96MW1 RNU6-449P-201ENST00000383914 107 ntBASIC-0.49□□□□□ -2.49
CCDC43Q96MW1 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.49□□□□□ -2.49
CCDC43Q96MW1 SNORD110-201ENST00000408189 75 ntBASIC-0.49□□□□□ -2.49
CCDC43Q96MW1 RNU6-275P-201ENST00000364910 107 ntBASIC-0.5□□□□□ -2.49
CCDC43Q96MW1 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.5□□□□□ -2.49
CCDC43Q96MW1 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.5□□□□□ -2.49
CCDC43Q96MW1 Y_RNA.574-201ENST00000384766 95 ntBASIC-0.5□□□□□ -2.49
CCDC43Q96MW1 AC006210.1-201ENST00000424882 111 ntBASIC-0.5□□□□□ -2.49
CCDC43Q96MW1 NAMPTP3-201ENST00000569273 224 ntBASIC-0.5□□□□□ -2.49
CCDC43Q96MW1 MIR4308-201ENST00000580634 81 ntBASIC-0.5□□□□□ -2.49
CCDC43Q96MW1 Y_RNA.396-201ENST00000383949 103 ntBASIC-0.51□□□□□ -2.49
CCDC43Q96MW1 RNU6-240P-201ENST00000516098 97 ntBASIC-0.51□□□□□ -2.49
CCDC43Q96MW1 RNA5SP275-201ENST00000363936 118 ntBASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 SNORA75.1-201ENST00000391130 148 ntBASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 BX276092.1-201ENST00000427368 251 ntBASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 RNA5SP484-201ENST00000458857 111 ntBASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 RNU6-1153P-201ENST00000516760 105 ntBASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 Y_RNA.720-201ENST00000517166 92 ntBASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 MIR4493-201ENST00000584016 73 ntBASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 AC084368.1-201ENST00000620935 65 ntBASIC-0.52□□□□□ -2.49
CCDC43Q96MW1 MIR101-1-201ENST00000362265 75 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 RNU6-865P-201ENST00000364772 107 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 MIR604-201ENST00000384880 94 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 RNA5SP451-201ENST00000410588 110 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 RNU4-69P-201ENST00000410677 143 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 RNU2-38P-201ENST00000410856 79 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 AC138907.4-201ENST00000570107 226 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 AC021443.1-201ENST00000604478 211 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 AC011603.4-201ENST00000611325 277 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 U6.106-201ENST00000636360 105 ntBASIC-0.53□□□□□ -2.49
CCDC43Q96MW1 RNU6-1227P-201ENST00000383981 107 ntBASIC-0.54□□□□□ -2.5
CCDC43Q96MW1 Y_RNA.422-201ENST00000384054 114 ntBASIC-0.54□□□□□ -2.5
CCDC43Q96MW1 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.54□□□□□ -2.5
CCDC43Q96MW1 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.54□□□□□ -2.5
CCDC43Q96MW1 AC096531.1-201ENST00000419107 107 ntBASIC-0.54□□□□□ -2.5
CCDC43Q96MW1 RNU7-164P-201ENST00000459221 62 ntBASIC-0.54□□□□□ -2.5
CCDC43Q96MW1 CR383656.4-201ENST00000546909 122 ntBASIC-0.54□□□□□ -2.5
CCDC43Q96MW1 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.54□□□□□ -2.5
CCDC43Q96MW1 RNU6-797P-201ENST00000363101 109 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 RNU6-509P-201ENST00000363519 107 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 RNA5SP368-201ENST00000364298 116 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 RNU6-768P-201ENST00000384683 107 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 MIR206-201ENST00000384872 86 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 MIR548H3-201ENST00000408771 118 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 AC097635.1-201ENST00000450678 155 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 RNU7-48P-201ENST00000458875 63 ntBASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.55□□□□□ -2.5
CCDC43Q96MW1 MIR148A-201ENST00000362215 68 ntBASIC-0.56□□□□□ -2.5
CCDC43Q96MW1 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.56□□□□□ -2.5
CCDC43Q96MW1 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.56□□□□□ -2.5
CCDC43Q96MW1 MIR876-201ENST00000401147 81 ntBASIC-0.56□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 288.6 ms