Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SNORD115-20-201ENST00000365099 82 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 RNU6-1335P-201ENST00000365426 107 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 MIR598-201ENST00000384868 97 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 SNORD105-201ENST00000386910 85 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 MIR759-201ENST00000390224 91 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 SNORD77B-201ENST00000391112 67 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 MIR938-201ENST00000401216 83 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 AL158147.1-201ENST00000443970 75 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 AC022523.2-201ENST00000561045 150 ntBASIC1.09□□□□□ -2.23
NUP88Q99567 Y_RNA.36-201ENST00000362602 112 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 RNU6-403P-201ENST00000363163 104 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 MIR539-201ENST00000365690 78 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 SNORA22-201ENST00000383907 134 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 RNU6-187P-201ENST00000384139 106 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 SNORA22C-201ENST00000384614 134 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 MIR125B2-201ENST00000385128 89 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 AC211469.2-201ENST00000605461 205 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.08□□□□□ -2.24
NUP88Q99567 RNU6-949P-201ENST00000384040 107 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 SNORA72.6-201ENST00000384520 129 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 MIR532-201ENST00000385025 91 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 MIR520H-201ENST00000385126 88 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU1-119P-201ENST00000391122 165 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-447P-201ENST00000410293 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-1118P-201ENST00000410382 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-1076P-201ENST00000410397 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-355P-201ENST00000410427 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-791P-201ENST00000410467 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-705P-201ENST00000410601 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU4-69P-201ENST00000410677 143 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-1100P-201ENST00000410691 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-860P-201ENST00000410860 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU4-83P-201ENST00000410863 133 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-1217P-201ENST00000411276 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 RNU6-785P-201ENST00000411324 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 MIR4804-201ENST00000581683 73 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 U6.90-201ENST00000614007 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 MIR6779-201ENST00000617283 64 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 U6.70-201ENST00000620287 104 ntBASIC1.07□□□□□ -2.24
NUP88Q99567 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.07□□□□□ -2.24
NUP88Q99567 RNY1P13-201ENST00000365030 105 ntBASIC1.06□□□□□ -2.24
NUP88Q99567 RNU1-36P-201ENST00000365130 165 ntBASIC1.06□□□□□ -2.24
NUP88Q99567 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
NUP88Q99567 SNORD99-201ENST00000408612 74 ntBASIC1.06□□□□□ -2.24
NUP88Q99567 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.06□□□□□ -2.24
NUP88Q99567 RNU6-971P-201ENST00000516920 106 ntBASIC1.06□□□□□ -2.24
NUP88Q99567 RNU7-35P-201ENST00000517174 62 ntBASIC1.06□□□□□ -2.24
NUP88Q99567 RNU7-156P-201ENST00000517214 74 ntBASIC1.06□□□□□ -2.24
NUP88Q99567 Y_RNA.213-201ENST00000364178 111 ntBASIC1.05□□□□□ -2.24
NUP88Q99567 U8.15-201ENST00000390947 134 ntBASIC1.05□□□□□ -2.24
NUP88Q99567 ACA64.5-201ENST00000516207 127 ntBASIC1.05□□□□□ -2.24
NUP88Q99567 IGKV1-22-201ENST00000524313 326 ntBASIC1.05□□□□□ -2.24
NUP88Q99567 RNU6-369P-201ENST00000362515 102 ntBASIC1.04□□□□□ -2.24
NUP88Q99567 Y_RNA.586-201ENST00000391146 98 ntBASIC1.04□□□□□ -2.24
NUP88Q99567 RNA5SP136-201ENST00000410906 107 ntBASIC1.04□□□□□ -2.24
NUP88Q99567 RNA5SP325-201ENST00000363756 130 ntBASIC1.03□□□□□ -2.24
NUP88Q99567 RNU7-102P-201ENST00000458948 62 ntBASIC1.03□□□□□ -2.24
NUP88Q99567 RNU7-6P-201ENST00000516845 62 ntBASIC1.03□□□□□ -2.24
NUP88Q99567 DEFB131E-201ENST00000532329 154 ntBASIC1.03□□□□□ -2.24
NUP88Q99567 AC011195.1-201ENST00000578177 177 ntBASIC1.03□□□□□ -2.24
NUP88Q99567 RNU6-704P-201ENST00000364162 103 ntBASIC1.02□□□□□ -2.25
NUP88Q99567 Y_RNA.528-201ENST00000384575 108 ntBASIC1.02□□□□□ -2.25
NUP88Q99567 RNU6-1104P-201ENST00000384723 104 ntBASIC1.02□□□□□ -2.25
NUP88Q99567 RNU6-781P-201ENST00000516377 101 ntBASIC1.02□□□□□ -2.25
NUP88Q99567 SNORD67.1-201ENST00000516618 108 ntBASIC1.02□□□□□ -2.25
NUP88Q99567 AC133485.1-201ENST00000567176 124 ntBASIC1.02□□□□□ -2.25
NUP88Q99567 Y_RNA.280-201ENST00000364765 112 ntBASIC1.01□□□□□ -2.25
NUP88Q99567 CYP3A137P-201ENST00000562436 69 ntBASIC1.01□□□□□ -2.25
NUP88Q99567 MIR3163-201ENST00000581592 73 ntBASIC1.01□□□□□ -2.25
NUP88Q99567 FAM71BP1-201ENST00000604431 523 ntBASIC1.01□□□□□ -2.25
NUP88Q99567 AL353765.1-201ENST00000605514 183 ntBASIC1.01□□□□□ -2.25
NUP88Q99567 MIR6857-201ENST00000613267 93 ntBASIC1.01□□□□□ -2.25
NUP88Q99567 AC105081.1-201ENST00000617727 106 ntBASIC1.01□□□□□ -2.25
NUP88Q99567 SNORD50.2-201ENST00000365465 70 ntBASIC1□□□□□ -2.25
NUP88Q99567 MIR608-201ENST00000384820 100 ntBASIC1□□□□□ -2.25
NUP88Q99567 MIR605-201ENST00000385078 83 ntBASIC1□□□□□ -2.25
NUP88Q99567 Y_RNA.617-201ENST00000410920 90 ntBASIC1□□□□□ -2.25
NUP88Q99567 SUMO1P3-201ENST00000439961 304 ntBASIC1□□□□□ -2.25
NUP88Q99567 RNU7-56P-201ENST00000458744 62 ntBASIC1□□□□□ -2.25
NUP88Q99567 MIR5000-201ENST00000577717 103 ntBASIC1□□□□□ -2.25
NUP88Q99567 AC025166.1-201ENST00000612411 163 ntBASIC1□□□□□ -2.25
NUP88Q99567 IST1-227ENST00000626438 126 ntTSL 5 BASIC1□□□□□ -2.25
NUP88Q99567 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
NUP88Q99567 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
NUP88Q99567 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.99□□□□□ -2.25
NUP88Q99567 RNU7-137P-201ENST00000516788 62 ntBASIC0.99□□□□□ -2.25
NUP88Q99567 MIR4491-201ENST00000581087 68 ntBASIC0.99□□□□□ -2.25
NUP88Q99567 Y_RNA.13-201ENST00000362403 112 ntBASIC0.98□□□□□ -2.25
NUP88Q99567 Y_RNA.198-201ENST00000364013 98 ntBASIC0.98□□□□□ -2.25
NUP88Q99567 SNORD58C-201ENST00000365223 64 ntBASIC0.98□□□□□ -2.25
NUP88Q99567 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.98□□□□□ -2.25
NUP88Q99567 COX6CP6-201ENST00000490840 228 ntBASIC0.98□□□□□ -2.25
NUP88Q99567 RNU6-772P-201ENST00000516042 105 ntBASIC0.98□□□□□ -2.25
NUP88Q99567 SNORD92-201ENST00000585078 85 ntBASIC0.98□□□□□ -2.25
NUP88Q99567 U6.109-201ENST00000636749 87 ntBASIC0.98□□□□□ -2.25
NUP88Q99567 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
NUP88Q99567 SNORD114-10-201ENST00000363409 72 ntBASIC0.97□□□□□ -2.25
NUP88Q99567 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
NUP88Q99567 RNA5SP222-201ENST00000411039 105 ntBASIC0.97□□□□□ -2.25
NUP88Q99567 TMSB4XP3-201ENST00000445144 114 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 305.5 ms