Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNA5SP193-201ENST00000410353 107 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP144-201ENST00000410846 116 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AL022718.1-201ENST00000412004 84 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AL512326.2-201ENST00000426359 151 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AC108059.2-201ENST00000434626 151 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 RNU7-156P-201ENST00000517214 74 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AC133485.4-201ENST00000561835 220 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AC138907.4-201ENST00000570107 226 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 MIR4804-201ENST00000581683 73 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 FAM71BP1-201ENST00000604431 523 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AC021443.1-201ENST00000604478 211 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 MIR2909-201ENST00000617113 69 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.778-201ENST00000620203 90 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 MIR6841-201ENST00000637129 72 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.470-201ENST00000384307 117 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNU6-886P-201ENST00000384319 105 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNU1-119P-201ENST00000391122 165 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 MIR513C-201ENST00000401352 84 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP272-201ENST00000516095 111 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNU6-794P-201ENST00000517261 64 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 AC141846.1-201ENST00000568348 142 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 MIR3144-201ENST00000579460 79 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 FTX_2.1-201ENST00000618816 94 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNU6-110P-201ENST00000384508 104 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 SNORA72.6-201ENST00000384520 129 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MIR563-201ENST00000385080 79 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MIR125B2-201ENST00000385128 89 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MT-TF-201ENST00000387314 71 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 RNU4-83P-201ENST00000410863 133 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1086P-201ENST00000410930 100 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 RNU7-102P-201ENST00000458948 62 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 RNU7-164P-201ENST00000459221 62 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MTND5P41-201ENST00000517498 206 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MIR4305-201ENST00000583252 102 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 AC008608.1-201ENST00000603910 127 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 AC021753.1-201ENST00000635724 168 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.366-201ENST00000365540 102 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNY1P8-201ENST00000383970 114 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 PCNPP3-201ENST00000393579 471 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-447P-201ENST00000410293 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1118P-201ENST00000410382 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1076P-201ENST00000410397 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-355P-201ENST00000410427 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-791P-201ENST00000410467 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-705P-201ENST00000410601 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1100P-201ENST00000410691 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-394P-201ENST00000410735 107 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-860P-201ENST00000410860 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1217P-201ENST00000411276 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-785P-201ENST00000411324 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 AC244098.3-201ENST00000424803 96 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU7-56P-201ENST00000458744 62 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-893P-201ENST00000458841 100 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU2-35P-201ENST00000516446 142 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 U6.90-201ENST00000614007 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 U6.70-201ENST00000620287 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP347-201ENST00000362445 119 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 RNU6-915P-201ENST00000364943 103 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.549-201ENST00000384657 102 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 U8.15-201ENST00000390947 134 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.651-201ENST00000459380 103 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 MIR6866-201ENST00000638146 69 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 MIR508-201ENST00000384857 115 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.617-201ENST00000410920 90 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 AC004812.1-201ENST00000540773 146 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 AC108081.1-201ENST00000604358 221 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 MIR6835-201ENST00000621552 64 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 AC243829.3-201ENST00000622177 108 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.120-201ENST00000363304 110 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 RNY1P13-201ENST00000365030 105 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 MIR573-201ENST00000384964 99 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 snoU13.19-201ENST00000459148 104 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 RNU7-123P-201ENST00000515911 60 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 RNU7-79P-201ENST00000516082 62 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 MIR3612-201ENST00000579753 87 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 MIR3668-201ENST00000582138 75 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 MIR548AE2-201ENST00000583456 67 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.13-201ENST00000362403 112 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.531-201ENST00000384589 121 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 RNU6-679P-201ENST00000391003 106 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.580-201ENST00000391004 95 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 MIR548X2-201ENST00000579776 100 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 MIR4636-201ENST00000582271 80 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 AC098479.1-201ENST00000609225 154 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 AC011603.4-201ENST00000611325 277 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 AC105081.1-201ENST00000617727 106 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.215-201ENST00000364204 112 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 RNU6-949P-201ENST00000384040 107 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.420-201ENST00000384043 110 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 AL603914.1-201ENST00000401964 204 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 RNU7-197P-201ENST00000458836 62 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 COX6CP6-201ENST00000490840 228 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 SNORA62.5-201ENST00000516634 120 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 DEFB131E-201ENST00000532329 154 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms