Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNA5SP193-201ENST00000410353 107 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP144-201ENST00000410846 116 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AL022718.1-201ENST00000412004 84 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AL512326.2-201ENST00000426359 151 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AC108059.2-201ENST00000434626 151 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 RNU7-156P-201ENST00000517214 74 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AC133485.4-201ENST00000561835 220 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AC138907.4-201ENST00000570107 226 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 MIR4804-201ENST00000581683 73 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 FAM71BP1-201ENST00000604431 523 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 AC021443.1-201ENST00000604478 211 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 MIR2909-201ENST00000617113 69 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.778-201ENST00000620203 90 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 MIR6841-201ENST00000637129 72 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.470-201ENST00000384307 117 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNU6-886P-201ENST00000384319 105 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNU1-119P-201ENST00000391122 165 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 MIR513C-201ENST00000401352 84 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP272-201ENST00000516095 111 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNU6-794P-201ENST00000517261 64 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 AC141846.1-201ENST00000568348 142 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 MIR3144-201ENST00000579460 79 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 FTX_2.1-201ENST00000618816 94 ntBASIC0.68□□□□□ -2.3
PDLIM3Q53GG5 RNU6-110P-201ENST00000384508 104 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 SNORA72.6-201ENST00000384520 129 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MIR563-201ENST00000385080 79 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MIR125B2-201ENST00000385128 89 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MT-TF-201ENST00000387314 71 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 RNU4-83P-201ENST00000410863 133 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1086P-201ENST00000410930 100 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 RNU7-102P-201ENST00000458948 62 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 RNU7-164P-201ENST00000459221 62 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MTND5P41-201ENST00000517498 206 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 MIR4305-201ENST00000583252 102 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 AC008608.1-201ENST00000603910 127 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 AC021753.1-201ENST00000635724 168 ntBASIC0.67□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.366-201ENST00000365540 102 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNY1P8-201ENST00000383970 114 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 PCNPP3-201ENST00000393579 471 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-447P-201ENST00000410293 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1118P-201ENST00000410382 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1076P-201ENST00000410397 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-355P-201ENST00000410427 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-791P-201ENST00000410467 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-705P-201ENST00000410601 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1100P-201ENST00000410691 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-394P-201ENST00000410735 107 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-860P-201ENST00000410860 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-1217P-201ENST00000411276 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-785P-201ENST00000411324 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 AC244098.3-201ENST00000424803 96 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU7-56P-201ENST00000458744 62 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU6-893P-201ENST00000458841 100 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNU2-35P-201ENST00000516446 142 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 U6.90-201ENST00000614007 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 U6.70-201ENST00000620287 104 ntBASIC0.66□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP347-201ENST00000362445 119 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 RNU6-915P-201ENST00000364943 103 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.549-201ENST00000384657 102 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 U8.15-201ENST00000390947 134 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.651-201ENST00000459380 103 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 MIR6866-201ENST00000638146 69 ntBASIC0.65□□□□□ -2.31
PDLIM3Q53GG5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 MIR508-201ENST00000384857 115 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.617-201ENST00000410920 90 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 AC004812.1-201ENST00000540773 146 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 AC108081.1-201ENST00000604358 221 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 MIR6835-201ENST00000621552 64 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 AC243829.3-201ENST00000622177 108 ntBASIC0.64□□□□□ -2.31
PDLIM3Q53GG5 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.120-201ENST00000363304 110 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 RNY1P13-201ENST00000365030 105 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 MIR573-201ENST00000384964 99 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 snoU13.19-201ENST00000459148 104 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 RNU7-123P-201ENST00000515911 60 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 RNU7-79P-201ENST00000516082 62 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 MIR3612-201ENST00000579753 87 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 MIR3668-201ENST00000582138 75 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 MIR548AE2-201ENST00000583456 67 ntBASIC0.63□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.13-201ENST00000362403 112 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.531-201ENST00000384589 121 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 RNU6-679P-201ENST00000391003 106 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.580-201ENST00000391004 95 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 MIR548X2-201ENST00000579776 100 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 MIR4636-201ENST00000582271 80 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 AC098479.1-201ENST00000609225 154 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 AC011603.4-201ENST00000611325 277 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 AC105081.1-201ENST00000617727 106 ntBASIC0.62□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.215-201ENST00000364204 112 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 RNU6-949P-201ENST00000384040 107 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.420-201ENST00000384043 110 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 AL603914.1-201ENST00000401964 204 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 RNU7-197P-201ENST00000458836 62 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 COX6CP6-201ENST00000490840 228 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 SNORA62.5-201ENST00000516634 120 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 DEFB131E-201ENST00000532329 154 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 245.7 ms