Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.47□□□□□ -2.33
NKX6-3A6NJ46 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
NKX6-3A6NJ46 Y_RNA.120-201ENST00000363304 110 ntBASIC0.46□□□□□ -2.34
NKX6-3A6NJ46 RNU6-309P-201ENST00000364573 106 ntBASIC0.46□□□□□ -2.34
NKX6-3A6NJ46 SNORD100-201ENST00000408573 76 ntBASIC0.46□□□□□ -2.34
NKX6-3A6NJ46 RNU7-121P-201ENST00000516604 62 ntBASIC0.46□□□□□ -2.34
NKX6-3A6NJ46 DEFB131E-201ENST00000532329 154 ntBASIC0.46□□□□□ -2.34
NKX6-3A6NJ46 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.46□□□□□ -2.34
NKX6-3A6NJ46 MIR3646-201ENST00000578301 84 ntBASIC0.46□□□□□ -2.34
NKX6-3A6NJ46 MIR6082-201ENST00000613604 109 ntBASIC0.46□□□□□ -2.34
NKX6-3A6NJ46 RNA5SP499-201ENST00000363982 119 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 RNU6-151P-201ENST00000364158 107 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.272-201ENST00000364696 102 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 RNU6-1318P-201ENST00000365389 103 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 MIR644A-201ENST00000385262 94 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 AC096949.1-201ENST00000412047 152 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 AC092628.1-201ENST00000436250 252 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 RNU7-164P-201ENST00000459221 62 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.690-201ENST00000516603 95 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 AC018659.1-201ENST00000551083 169 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 AC112693.2-201ENST00000556538 232 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 MIR3678-201ENST00000578455 94 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 MIR548AE2-201ENST00000583456 67 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 AC092634.7-201ENST00000621022 103 ntBASIC0.45□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.8-201ENST00000362353 102 ntBASIC0.44□□□□□ -2.34
NKX6-3A6NJ46 RNU6-1130P-201ENST00000365434 107 ntBASIC0.44□□□□□ -2.34
NKX6-3A6NJ46 MIR936-201ENST00000401264 98 ntBASIC0.44□□□□□ -2.34
NKX6-3A6NJ46 AL157398.1-201ENST00000452981 186 ntBASIC0.44□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.651-201ENST00000459380 103 ntBASIC0.44□□□□□ -2.34
NKX6-3A6NJ46 MTND5P34-201ENST00000568888 325 ntBASIC0.44□□□□□ -2.34
NKX6-3A6NJ46 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
NKX6-3A6NJ46 RNU4-45P-201ENST00000365469 141 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.366-201ENST00000365540 102 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.531-201ENST00000384589 121 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.567-201ENST00000384736 106 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 MIR613-201ENST00000385248 95 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 RNU6-1135P-201ENST00000411083 103 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 SNORA68.3-201ENST00000515906 83 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.697-201ENST00000516776 113 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 RNU7-35P-201ENST00000517174 62 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 MIR4711-201ENST00000578274 70 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 AC105081.1-201ENST00000617727 106 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 MIR5087-201ENST00000635826 76 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 U6.109-201ENST00000636749 87 ntBASIC0.43□□□□□ -2.34
NKX6-3A6NJ46 RNA5SP517-201ENST00000364724 117 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 SNORD116-18-201ENST00000383961 92 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.441-201ENST00000384123 112 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 RNU6-460P-201ENST00000391158 108 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 RNA5SP193-201ENST00000410353 107 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 RNU7-123P-201ENST00000515911 60 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 SNORA25.12-201ENST00000516202 82 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 SNORD67.1-201ENST00000516618 108 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 RNA5SP94-201ENST00000516917 108 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 SNORA25.18-201ENST00000607153 114 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 AC011603.4-201ENST00000611325 277 ntBASIC0.42□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.32-201ENST00000362589 110 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 RNA5SP133-201ENST00000363368 119 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 RNU6-449P-201ENST00000383914 107 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 AC114737.2-201ENST00000421583 173 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 RNU6-1194P-201ENST00000516208 104 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 RNU6-469P-201ENST00000516253 101 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 RNU6-229P-201ENST00000516614 102 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 RNU6-531P-201ENST00000516694 104 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.700-201ENST00000516806 100 ntBASIC0.41□□□□□ -2.34
NKX6-3A6NJ46 Y_RNA.150-201ENST00000363562 102 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.251-201ENST00000364551 99 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 RNU6-804P-201ENST00000384286 107 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.785-201ENST00000384290 109 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 RNU6-535P-201ENST00000384722 107 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 AC098934.3-201ENST00000430450 190 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 SNORA31.14-201ENST00000516728 116 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 RNU6-182P-201ENST00000516970 105 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 AC022523.2-201ENST00000561045 150 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 AL359881.1-201ENST00000602916 267 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 AC108081.1-201ENST00000604358 221 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.778-201ENST00000620203 90 ntBASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.4□□□□□ -2.35
NKX6-3A6NJ46 SNORD115-2-201ENST00000362842 82 ntBASIC0.39□□□□□ -2.35
NKX6-3A6NJ46 SNORD115-20-201ENST00000365099 82 ntBASIC0.39□□□□□ -2.35
NKX6-3A6NJ46 RNU6-291P-201ENST00000384720 107 ntBASIC0.39□□□□□ -2.35
NKX6-3A6NJ46 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.39□□□□□ -2.35
NKX6-3A6NJ46 AP003327.1-201ENST00000529684 127 ntBASIC0.39□□□□□ -2.35
NKX6-3A6NJ46 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.39□□□□□ -2.35
NKX6-3A6NJ46 AC243829.3-201ENST00000622177 108 ntBASIC0.39□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.270-201ENST00000364693 104 ntBASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.298-201ENST00000364960 107 ntBASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.536-201ENST00000384621 113 ntBASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 AL603914.1-201ENST00000401964 204 ntBASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 RN7SKP12-201ENST00000516275 143 ntBASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 RNU7-137P-201ENST00000516788 62 ntBASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 RNA5SP480-201ENST00000516840 109 ntBASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 RN7SL793P-201ENST00000583259 296 ntBASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.38□□□□□ -2.35
NKX6-3A6NJ46 SNORD114-26-201ENST00000363543 72 ntBASIC0.37□□□□□ -2.35
NKX6-3A6NJ46 SNORA50A-201ENST00000384225 134 ntBASIC0.37□□□□□ -2.35
NKX6-3A6NJ46 MIR216A-201ENST00000385063 110 ntBASIC0.37□□□□□ -2.35
NKX6-3A6NJ46 SNORD71-201ENST00000411292 86 ntBASIC0.37□□□□□ -2.35
NKX6-3A6NJ46 MIR1270-201ENST00000459320 83 ntBASIC0.37□□□□□ -2.35
NKX6-3A6NJ46 RNY4P20-201ENST00000516678 93 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 165.3 ms