Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PSMC1P5-201ENST00000512850 177 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 RNU6-351P-201ENST00000516097 100 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 RNU6-240P-201ENST00000516098 97 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 MTND5P41-201ENST00000517498 206 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 MIR3144-201ENST00000579460 79 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 RNU6-690P-201ENST00000365242 106 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 RNU6-449P-201ENST00000383914 107 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 Y_RNA.398-201ENST00000383952 99 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 SNORA18-201ENST00000384416 132 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 Y_RNA.580-201ENST00000391004 95 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 RNU6-460P-201ENST00000391158 108 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 RNU7-56P-201ENST00000458744 62 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 RNU2-35P-201ENST00000516446 142 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 AC141846.1-201ENST00000568348 142 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 AC025627.3-201ENST00000582078 182 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 AC008608.1-201ENST00000603910 127 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 AL136317.1-201ENST00000612653 226 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 AL662814.1-201ENST00000617364 121 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 Y_RNA.778-201ENST00000620203 90 ntBASIC0.69□□□□□ -2.3
NKX3-1Q99801 MIR520H-201ENST00000385126 88 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 RNA5SP237-201ENST00000410414 113 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 AC244098.3-201ENST00000424803 96 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.68□□□□□ -2.3
NKX3-1Q99801 RNU6-1223P-201ENST00000517124 104 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 AC011195.1-201ENST00000578177 177 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 MIR7111-201ENST00000619751 72 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 AC021753.1-201ENST00000635724 168 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 MIR6866-201ENST00000638146 69 ntBASIC0.68□□□□□ -2.3
NKX3-1Q99801 MIR125B2-201ENST00000385128 89 ntBASIC0.67□□□□□ -2.3
NKX3-1Q99801 U8.15-201ENST00000390947 134 ntBASIC0.67□□□□□ -2.3
NKX3-1Q99801 Y_RNA.690-201ENST00000516603 95 ntBASIC0.67□□□□□ -2.3
NKX3-1Q99801 MIR4305-201ENST00000583252 102 ntBASIC0.67□□□□□ -2.3
NKX3-1Q99801 MIR6515-201ENST00000619843 57 ntBASIC0.67□□□□□ -2.3
NKX3-1Q99801 AL589743.1-201ENST00000551932 2712 ntBASIC0.67□□□□□ -2.3
NKX3-1Q99801 Y_RNA.120-201ENST00000363304 110 ntBASIC0.66□□□□□ -2.3
NKX3-1Q99801 AC096949.1-201ENST00000412047 152 ntBASIC0.66□□□□□ -2.3
NKX3-1Q99801 RNU5E-3P-201ENST00000515913 68 ntBASIC0.66□□□□□ -2.3
NKX3-1Q99801 RNA5SP272-201ENST00000516095 111 ntBASIC0.66□□□□□ -2.3
NKX3-1Q99801 SNORA25.12-201ENST00000516202 82 ntBASIC0.66□□□□□ -2.3
NKX3-1Q99801 RNU7-156P-201ENST00000517214 74 ntBASIC0.66□□□□□ -2.3
NKX3-1Q99801 AC108081.1-201ENST00000604358 221 ntBASIC0.66□□□□□ -2.3
NKX3-1Q99801 MIR373-201ENST00000362273 69 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 RNY1P13-201ENST00000365030 105 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 Y_RNA.366-201ENST00000365540 102 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 SNORD18B-201ENST00000365659 72 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 MT-TF-201ENST00000387314 71 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 RNU1-119P-201ENST00000391122 165 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 MIR938-201ENST00000401216 83 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 AL603914.1-201ENST00000401964 204 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 MIR1257-201ENST00000408490 117 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 SNORD93-201ENST00000408813 74 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 AL606490.4-201ENST00000423117 127 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 MTATP6P21-201ENST00000440681 189 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 RNU7-102P-201ENST00000458948 62 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 RNU7-113P-201ENST00000459273 62 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 AC004812.1-201ENST00000540773 146 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 AC133485.4-201ENST00000561835 220 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 CYP3A137P-201ENST00000562436 69 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 AC138907.4-201ENST00000570107 226 ntBASIC0.65□□□□□ -2.31
NKX3-1Q99801 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
NKX3-1Q99801 RNY1P8-201ENST00000383970 114 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 SNORA32-201ENST00000384072 121 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 MIR489-201ENST00000384923 84 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 RNU6-907P-201ENST00000390924 102 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 AL022718.1-201ENST00000412004 84 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 RNU7-79P-201ENST00000516082 62 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 RNA5SP33-201ENST00000516687 98 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 AC133485.1-201ENST00000567176 124 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 AC138907.6-201ENST00000568401 126 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 AC021443.1-201ENST00000604478 211 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 AC098479.1-201ENST00000609225 154 ntBASIC0.64□□□□□ -2.31
NKX3-1Q99801 RNU6-364P-201ENST00000384387 107 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 Y_RNA.531-201ENST00000384589 121 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 Y_RNA.555-201ENST00000384673 110 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 MIR573-201ENST00000384964 99 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 RNA5SP222-201ENST00000411039 105 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 RNU6-893P-201ENST00000458841 100 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 RNU7-164P-201ENST00000459221 62 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 MIR5000-201ENST00000577717 103 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 MIR548AE2-201ENST00000583456 67 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 AC011603.4-201ENST00000611325 277 ntBASIC0.63□□□□□ -2.31
NKX3-1Q99801 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
NKX3-1Q99801 SNORD115-2-201ENST00000362842 82 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 Y_RNA.215-201ENST00000364204 112 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 Y_RNA.294-201ENST00000364916 102 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-915P-201ENST00000364943 103 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 SNORD115-20-201ENST00000365099 82 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 MIR508-201ENST00000384857 115 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 Y_RNA.588-201ENST00000391254 102 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-447P-201ENST00000410293 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-1118P-201ENST00000410382 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-1076P-201ENST00000410397 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-355P-201ENST00000410427 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-791P-201ENST00000410467 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-705P-201ENST00000410601 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-1100P-201ENST00000410691 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-860P-201ENST00000410860 104 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 173.2 ms