Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.84□□□□□ -2.28
USP41Q3LFD5 MIR30D-201ENST00000362283 70 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 RNU6-369P-201ENST00000362515 102 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 Y_RNA.171-201ENST00000363760 102 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR608-201ENST00000384820 100 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR520F-201ENST00000384824 87 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR605-201ENST00000385078 83 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR563-201ENST00000385080 79 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 PCNPP3-201ENST00000393579 471 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 SNORD99-201ENST00000408612 74 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 RNA5SP144-201ENST00000410846 116 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 RPL39P25-201ENST00000449384 154 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 Y_RNA.757-201ENST00000578934 114 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR3144-201ENST00000579460 79 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR4714-201ENST00000580728 77 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR4676-201ENST00000583078 72 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR6835-201ENST00000621552 64 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 MIR6866-201ENST00000638146 69 ntBASIC0.83□□□□□ -2.28
USP41Q3LFD5 RNU6-508P-201ENST00000363231 103 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 Y_RNA.398-201ENST00000383952 99 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 SNORA18-201ENST00000384416 132 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 MT-TF-201ENST00000387314 71 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 Y_RNA.580-201ENST00000391004 95 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 MIR1257-201ENST00000408490 117 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 AL022718.1-201ENST00000412004 84 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 RNU6-240P-201ENST00000516098 97 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 Y_RNA.686-201ENST00000516548 134 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 Y_RNA.690-201ENST00000516603 95 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 RNU6-1258P-201ENST00000516911 111 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 AC133485.1-201ENST00000567176 124 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 AC138907.6-201ENST00000568401 126 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 MIR3668-201ENST00000582138 75 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 AL353765.1-201ENST00000605514 183 ntBASIC0.82□□□□□ -2.28
USP41Q3LFD5 SNORD114-26-201ENST00000363543 72 ntBASIC0.81□□□□□ -2.28
USP41Q3LFD5 Y_RNA.251-201ENST00000364551 99 ntBASIC0.81□□□□□ -2.28
USP41Q3LFD5 RNU6-309P-201ENST00000364573 106 ntBASIC0.81□□□□□ -2.28
USP41Q3LFD5 MIR513C-201ENST00000401352 84 ntBASIC0.81□□□□□ -2.28
USP41Q3LFD5 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.81□□□□□ -2.28
USP41Q3LFD5 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.81□□□□□ -2.28
USP41Q3LFD5 RNU7-185P-201ENST00000459215 60 ntBASIC0.81□□□□□ -2.28
USP41Q3LFD5 AC011603.4-201ENST00000611325 277 ntBASIC0.81□□□□□ -2.28
USP41Q3LFD5 AL662814.1-201ENST00000617364 121 ntBASIC0.81□□□□□ -2.28
USP41Q3LFD5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.81□□□□□ -2.28
USP41Q3LFD5 Y_RNA.120-201ENST00000363304 110 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 MIR520H-201ENST00000385126 88 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 RNU6-460P-201ENST00000391158 108 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 RNU7-113P-201ENST00000459273 62 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 PSMC1P5-201ENST00000512850 177 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 SNORA25.12-201ENST00000516202 82 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 AC133485.4-201ENST00000561835 220 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 AC141846.1-201ENST00000568348 142 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 AC138907.4-201ENST00000570107 226 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 MIR4804-201ENST00000581683 73 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 MIR4305-201ENST00000583252 102 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.8□□□□□ -2.28
USP41Q3LFD5 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.79□□□□□ -2.28
USP41Q3LFD5 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
USP41Q3LFD5 Y_RNA.555-201ENST00000384673 110 ntBASIC0.79□□□□□ -2.28
USP41Q3LFD5 MIR7-2-201ENST00000384970 110 ntBASIC0.79□□□□□ -2.28
USP41Q3LFD5 MIR938-201ENST00000401216 83 ntBASIC0.79□□□□□ -2.28
USP41Q3LFD5 SNORD93-201ENST00000408813 74 ntBASIC0.79□□□□□ -2.28
USP41Q3LFD5 Y_RNA.651-201ENST00000459380 103 ntBASIC0.79□□□□□ -2.28
USP41Q3LFD5 AC011195.1-201ENST00000578177 177 ntBASIC0.79□□□□□ -2.28
USP41Q3LFD5 AC021443.1-201ENST00000604478 211 ntBASIC0.79□□□□□ -2.28
USP41Q3LFD5 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.79□□□□□ -2.28
USP41Q3LFD5 Y_RNA.470-201ENST00000384307 117 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 RNU6-364P-201ENST00000384387 107 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 MIR125B2-201ENST00000385128 89 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 AL603914.1-201ENST00000401964 204 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 RNA5SP33-201ENST00000516687 98 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 RNU7-156P-201ENST00000517214 74 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 AC013244.2-201ENST00000603396 103 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 AC021753.1-201ENST00000635724 168 ntBASIC0.78□□□□□ -2.28
USP41Q3LFD5 Y_RNA.36-201ENST00000362602 112 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
USP41Q3LFD5 MIR508-201ENST00000384857 115 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 RNU1-119P-201ENST00000391122 165 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 AL512326.2-201ENST00000426359 151 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 RNU7-56P-201ENST00000458744 62 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 RNU7-197P-201ENST00000458836 62 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 RNU7-164P-201ENST00000459221 62 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 MTND5P41-201ENST00000517498 206 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 MIR548X2-201ENST00000579776 100 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 MIR4653-201ENST00000585107 83 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 AL590095.2-201ENST00000604136 117 ntBASIC0.77□□□□□ -2.29
USP41Q3LFD5 RNU6-915P-201ENST00000364943 103 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 SNORA32-201ENST00000384072 121 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-447P-201ENST00000410293 104 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-1118P-201ENST00000410382 104 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-1076P-201ENST00000410397 104 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-355P-201ENST00000410427 104 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-791P-201ENST00000410467 104 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-705P-201ENST00000410601 104 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-1100P-201ENST00000410691 104 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-860P-201ENST00000410860 104 ntBASIC0.76□□□□□ -2.29
USP41Q3LFD5 RNU6-1217P-201ENST00000411276 104 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 228.6 ms