Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 AL442067.1-201ENST00000613261 223 ntBASIC-0.42□□□□□ -2.48
ZNF404Q494X3 U6atac.1-201ENST00000616025 117 ntBASIC-0.42□□□□□ -2.48
ZNF404Q494X3 SNORD114-31-201ENST00000363219 75 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 SNORD115-24-201ENST00000363528 82 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 SNORA63.5-201ENST00000363548 123 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 Y_RNA.183-201ENST00000363882 113 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 Y_RNA.303-201ENST00000364998 94 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 SNORA75.1-201ENST00000391130 148 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 AC108059.2-201ENST00000434626 151 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 RNU6-531P-201ENST00000516694 104 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-0.43□□□□□ -2.48
ZNF404Q494X3 AL670379.3-201ENST00000605040 251 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 MIR3666-201ENST00000607845 111 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.43□□□□□ -2.48
ZNF404Q494X3 RNU4-58P-201ENST00000363192 141 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 Y_RNA.154-201ENST00000363624 102 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 Y_RNA.217-201ENST00000364214 105 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 Y_RNA.394-201ENST00000383942 103 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 Y_RNA.581-201ENST00000391017 97 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 MIR1302-11-201ENST00000408051 138 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 MIR1302-9-201ENST00000408365 138 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 MIR1302-10-201ENST00000408734 138 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 Y_RNA.641-201ENST00000459414 105 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 SNORD19B-201ENST00000459623 84 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 MIR1302-2-201ENST00000607096 138 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 AL132765.2-201ENST00000610812 351 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 AC021613.1-201ENST00000623880 111 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 snoU18.1-201ENST00000629629 71 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 AC073869.9-201ENST00000641610 120 ntBASIC-0.44□□□□□ -2.48
ZNF404Q494X3 MIR148A-201ENST00000362215 68 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 RNA5SP275-201ENST00000363936 118 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 RNU6-923P-201ENST00000364753 107 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 SNORA63.7-201ENST00000365579 123 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 RNY3P5-201ENST00000384127 102 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.45□□□□□ -2.48
ZNF404Q494X3 SNORA53-201ENST00000391141 249 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 Y_RNA.622-201ENST00000411091 108 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 RNU7-161P-201ENST00000517289 62 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 MIR3129-201ENST00000581095 76 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 MIR6514-201ENST00000622549 70 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 AC090574.1-201ENST00000623186 233 ntBASIC-0.45□□□□□ -2.48
ZNF404Q494X3 MIR101-2-201ENST00000362195 79 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 Y_RNA.23-201ENST00000362496 106 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 Y_RNA.70-201ENST00000362886 110 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 RNU6-702P-201ENST00000364982 107 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 RNU6-326P-201ENST00000365480 107 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 SNORD41.1-201ENST00000391000 69 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 RNA5SP300-201ENST00000391197 107 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 RPL21P38-201ENST00000418090 167 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 AC109327.2-201ENST00000448339 378 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 SNRPGP8-201ENST00000454064 226 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-0.46□□□□□ -2.48
ZNF404Q494X3 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.46□□□□□ -2.48
ZNF404Q494X3 MIR4645-201ENST00000583158 77 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 AC011921.3-201ENST00000605540 361 ntBASIC-0.46□□□□□ -2.48
ZNF404Q494X3 RNA5SP133-201ENST00000363368 119 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 RNU4-40P-201ENST00000364351 143 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 RNU5E-4P-201ENST00000364931 120 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 SNORD14C-201ENST00000365382 88 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 RNU6-1292P-201ENST00000383856 107 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 MIR626-201ENST00000385032 94 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 AC138393.2-201ENST00000414742 246 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 AC096531.1-201ENST00000419107 107 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 SNORA27.4-201ENST00000516650 95 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 RNU7-70P-201ENST00000516941 66 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 RNU6-897P-201ENST00000517135 105 ntBASIC-0.47□□□□□ -2.48
ZNF404Q494X3 RNA5SP403-201ENST00000363598 108 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 SNORD49B-201ENST00000365172 72 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 RNU6-1228P-201ENST00000391014 107 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 MIR876-201ENST00000401147 81 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-0.48□□□□□ -2.49
ZNF404Q494X3 RNU6-893P-201ENST00000458841 100 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 RNU7-104P-201ENST00000459398 79 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 RNU7-79P-201ENST00000516082 62 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 MIR8064-201ENST00000612863 90 ntBASIC-0.48□□□□□ -2.49
ZNF404Q494X3 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.49□□□□□ -2.49
ZNF404Q494X3 SNORD114-28-201ENST00000363610 72 ntBASIC-0.49□□□□□ -2.49
ZNF404Q494X3 MT-TT-201ENST00000387460 66 ntBASIC-0.49□□□□□ -2.49
ZNF404Q494X3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-0.49□□□□□ -2.49
ZNF404Q494X3 MIR1912-201ENST00000410389 80 ntBASIC-0.49□□□□□ -2.49
ZNF404Q494X3 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-0.49□□□□□ -2.49
ZNF404Q494X3 RNU7-35P-201ENST00000517174 62 ntBASIC-0.49□□□□□ -2.49
ZNF404Q494X3 MIR4802-201ENST00000581881 80 ntBASIC-0.49□□□□□ -2.49
ZNF404Q494X3 U6.109-201ENST00000636749 87 ntBASIC-0.49□□□□□ -2.49
ZNF404Q494X3 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.5□□□□□ -2.49
ZNF404Q494X3 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.5□□□□□ -2.49
ZNF404Q494X3 RNU6-211P-201ENST00000384047 107 ntBASIC-0.5□□□□□ -2.49
ZNF404Q494X3 RNU4-70P-201ENST00000384579 139 ntBASIC-0.5□□□□□ -2.49
ZNF404Q494X3 Y_RNA.541-201ENST00000384640 113 ntBASIC-0.5□□□□□ -2.49
ZNF404Q494X3 SNORD126-201ENST00000459475 77 ntBASIC-0.5□□□□□ -2.49
ZNF404Q494X3 MIR5589-201ENST00000579442 60 ntBASIC-0.5□□□□□ -2.49
ZNF404Q494X3 MTND5P32-201ENST00000560711 1802 ntBASIC-0.5□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms