Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 Y_RNA.238-201ENST00000364441 102 ntBASIC0.33□□□□□ -2.36
VIMP08670 RNU6-923P-201ENST00000364753 107 ntBASIC0.33□□□□□ -2.36
VIMP08670 MIR216A-201ENST00000385063 110 ntBASIC0.33□□□□□ -2.36
VIMP08670 SNORD71-201ENST00000411292 86 ntBASIC0.33□□□□□ -2.36
VIMP08670 RNU6-1149P-201ENST00000516810 97 ntBASIC0.33□□□□□ -2.36
VIMP08670 AC243829.6-201ENST00000612652 106 ntBASIC0.33□□□□□ -2.36
VIMP08670 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.33□□□□□ -2.36
VIMP08670 uc_338.16-201ENST00000621804 95 ntBASIC0.33□□□□□ -2.36
VIMP08670 MIR103A1-201ENST00000362165 78 ntBASIC0.32□□□□□ -2.36
VIMP08670 Y_RNA.13-201ENST00000362403 112 ntBASIC0.32□□□□□ -2.36
VIMP08670 Y_RNA.65-201ENST00000362846 100 ntBASIC0.32□□□□□ -2.36
VIMP08670 RNU6-403P-201ENST00000363163 104 ntBASIC0.32□□□□□ -2.36
VIMP08670 Y_RNA.562-201ENST00000384695 113 ntBASIC0.32□□□□□ -2.36
VIMP08670 MIR548J-201ENST00000408833 112 ntBASIC0.32□□□□□ -2.36
VIMP08670 MTND2P23-201ENST00000422990 651 ntBASIC0.32□□□□□ -2.36
VIMP08670 RNU6-1132P-201ENST00000459214 107 ntBASIC0.32□□□□□ -2.36
VIMP08670 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
VIMP08670 AC133485.4-201ENST00000561835 220 ntBASIC0.32□□□□□ -2.36
VIMP08670 SNORA25.18-201ENST00000607153 114 ntBASIC0.32□□□□□ -2.36
VIMP08670 MIR8070-201ENST00000616510 88 ntBASIC0.32□□□□□ -2.36
VIMP08670 AC243829.3-201ENST00000622177 108 ntBASIC0.32□□□□□ -2.36
VIMP08670 AC090625.1-201ENST00000357130 210 ntBASIC0.31□□□□□ -2.36
VIMP08670 Y_RNA.269-201ENST00000364685 89 ntBASIC0.31□□□□□ -2.36
VIMP08670 RNU4-16P-201ENST00000364737 141 ntBASIC0.31□□□□□ -2.36
VIMP08670 SNORA8.2-201ENST00000384372 139 ntBASIC0.31□□□□□ -2.36
VIMP08670 RNU6-1011P-201ENST00000384668 107 ntBASIC0.31□□□□□ -2.36
VIMP08670 Y_RNA.567-201ENST00000384736 106 ntBASIC0.31□□□□□ -2.36
VIMP08670 MIR624-201ENST00000385217 97 ntBASIC0.31□□□□□ -2.36
VIMP08670 AC098934.3-201ENST00000430450 190 ntBASIC0.31□□□□□ -2.36
VIMP08670 MTND1P19-201ENST00000511780 315 ntBASIC0.31□□□□□ -2.36
VIMP08670 RNU6-1223P-201ENST00000517124 104 ntBASIC0.31□□□□□ -2.36
VIMP08670 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.3□□□□□ -2.36
VIMP08670 SNORD44.1-201ENST00000363202 61 ntBASIC0.3□□□□□ -2.36
VIMP08670 Y_RNA.121-201ENST00000363309 113 ntBASIC0.3□□□□□ -2.36
VIMP08670 RNU6-643P-201ENST00000384018 107 ntBASIC0.3□□□□□ -2.36
VIMP08670 Y_RNA.477-201ENST00000384352 108 ntBASIC0.3□□□□□ -2.36
VIMP08670 SNORA18-201ENST00000384416 132 ntBASIC0.3□□□□□ -2.36
VIMP08670 Y_RNA.588-201ENST00000391254 102 ntBASIC0.3□□□□□ -2.36
VIMP08670 AP003327.1-201ENST00000529684 127 ntBASIC0.3□□□□□ -2.36
VIMP08670 AC022523.2-201ENST00000561045 150 ntBASIC0.3□□□□□ -2.36
VIMP08670 MIR4308-201ENST00000580634 81 ntBASIC0.3□□□□□ -2.36
VIMP08670 MIR4491-201ENST00000581087 68 ntBASIC0.3□□□□□ -2.36
VIMP08670 AL078603.1-201ENST00000603824 313 ntBASIC0.3□□□□□ -2.36
VIMP08670 AL360085.1-201ENST00000604713 532 ntBASIC0.3□□□□□ -2.36
VIMP08670 MIR6082-201ENST00000613604 109 ntBASIC0.3□□□□□ -2.36
VIMP08670 MIR6513-201ENST00000621188 64 ntBASIC0.3□□□□□ -2.36
VIMP08670 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
VIMP08670 SNORD118-201ENST00000363593 134 ntBASIC0.29□□□□□ -2.36
VIMP08670 Y_RNA.182-201ENST00000363880 111 ntBASIC0.29□□□□□ -2.36
VIMP08670 RNU6-949P-201ENST00000384040 107 ntBASIC0.29□□□□□ -2.36
VIMP08670 Y_RNA.539-201ENST00000384635 107 ntBASIC0.29□□□□□ -2.36
VIMP08670 Y_RNA.571-201ENST00000384753 98 ntBASIC0.29□□□□□ -2.36
VIMP08670 MIR644A-201ENST00000385262 94 ntBASIC0.29□□□□□ -2.36
VIMP08670 Y_RNA.626-201ENST00000411288 95 ntBASIC0.29□□□□□ -2.36
VIMP08670 AC096949.1-201ENST00000412047 152 ntBASIC0.29□□□□□ -2.36
VIMP08670 SNRPGP12-201ENST00000449481 213 ntBASIC0.29□□□□□ -2.36
VIMP08670 VTRNA1-3-201ENST00000365645 89 ntBASIC0.28□□□□□ -2.36
VIMP08670 MIR499A-201ENST00000384903 122 ntBASIC0.28□□□□□ -2.36
VIMP08670 MTCYBP9-201ENST00000431021 303 ntBASIC0.28□□□□□ -2.36
VIMP08670 RNU6-469P-201ENST00000516253 101 ntBASIC0.28□□□□□ -2.36
VIMP08670 Y_RNA.673-201ENST00000516306 88 ntBASIC0.28□□□□□ -2.36
VIMP08670 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
VIMP08670 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.28□□□□□ -2.36
VIMP08670 SNORA36.1-201ENST00000363424 132 ntBASIC0.27□□□□□ -2.37
VIMP08670 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
VIMP08670 SNORA72.6-201ENST00000384520 129 ntBASIC0.27□□□□□ -2.37
VIMP08670 RNU4-70P-201ENST00000384579 139 ntBASIC0.27□□□□□ -2.37
VIMP08670 Y_RNA.556-201ENST00000384677 113 ntBASIC0.27□□□□□ -2.37
VIMP08670 MIR568-201ENST00000385036 95 ntBASIC0.27□□□□□ -2.37
VIMP08670 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
VIMP08670 Y_RNA.757-201ENST00000578934 114 ntBASIC0.27□□□□□ -2.37
VIMP08670 MTND5P32-201ENST00000560711 1802 ntBASIC0.27□□□□□ -2.37
VIMP08670 Y_RNA.20-201ENST00000362479 113 ntBASIC0.26□□□□□ -2.37
VIMP08670 RNA5SP432-201ENST00000362480 116 ntBASIC0.26□□□□□ -2.37
VIMP08670 Y_RNA.133-201ENST00000363428 110 ntBASIC0.26□□□□□ -2.37
VIMP08670 SNORA25.7-201ENST00000364375 127 ntBASIC0.26□□□□□ -2.37
VIMP08670 RNY1P13-201ENST00000365030 105 ntBASIC0.26□□□□□ -2.37
VIMP08670 Y_RNA.515-201ENST00000384535 112 ntBASIC0.26□□□□□ -2.37
VIMP08670 SNORD58.1-201ENST00000391313 66 ntBASIC0.26□□□□□ -2.37
VIMP08670 AL512326.2-201ENST00000426359 151 ntBASIC0.26□□□□□ -2.37
VIMP08670 RNU6-893P-201ENST00000458841 100 ntBASIC0.26□□□□□ -2.37
VIMP08670 Y_RNA.668-201ENST00000516233 93 ntBASIC0.26□□□□□ -2.37
VIMP08670 RNA5SP220-201ENST00000516298 104 ntBASIC0.26□□□□□ -2.37
VIMP08670 RNU6-1258P-201ENST00000516911 111 ntBASIC0.26□□□□□ -2.37
VIMP08670 RNU6-765P-201ENST00000516916 99 ntBASIC0.26□□□□□ -2.37
VIMP08670 MRPS18CP4-201ENST00000535821 231 ntBASIC0.26□□□□□ -2.37
VIMP08670 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
VIMP08670 Y_RNA.4-201ENST00000362333 112 ntBASIC0.25□□□□□ -2.37
VIMP08670 Y_RNA.32-201ENST00000362589 110 ntBASIC0.25□□□□□ -2.37
VIMP08670 RNU6-694P-201ENST00000364071 147 ntBASIC0.25□□□□□ -2.37
VIMP08670 RNU6-275P-201ENST00000364910 107 ntBASIC0.25□□□□□ -2.37
VIMP08670 RNU6-1336P-201ENST00000383886 109 ntBASIC0.25□□□□□ -2.37
VIMP08670 MIR1302-3-201ENST00000408128 138 ntBASIC0.25□□□□□ -2.37
VIMP08670 RNU5E-9P-201ENST00000411164 104 ntBASIC0.25□□□□□ -2.37
VIMP08670 RNU6-327P-201ENST00000516270 127 ntBASIC0.25□□□□□ -2.37
VIMP08670 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.25□□□□□ -2.37
VIMP08670 AL589743.1-201ENST00000551932 2712 ntBASIC0.24□□□□□ -2.37
VIMP08670 RNA5SP62-201ENST00000363457 110 ntBASIC0.24□□□□□ -2.37
VIMP08670 Y_RNA.171-201ENST00000363760 102 ntBASIC0.24□□□□□ -2.37
VIMP08670 Y_RNA.350-201ENST00000365409 98 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 287.4 ms