Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AP000533.3-201ENST00000447704 118 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 AC021146.6-201ENST00000514659 117 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 RNU6-1332P-201ENST00000516666 104 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 MTND4P7-201ENST00000523876 130 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 RNU4-58P-201ENST00000363192 141 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 RNU7-96P-201ENST00000459535 64 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 AC016550.1-201ENST00000505348 785 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 RNA5SP33-201ENST00000516687 98 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 AL121757.2-201ENST00000611223 313 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 AC092794.2-201ENST00000620933 563 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.1-201ENST00000352915 104 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU6-502P-201ENST00000362419 108 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 SNORD18.1-201ENST00000363807 70 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU6-449P-201ENST00000383914 107 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU4-70P-201ENST00000384579 139 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC096949.1-201ENST00000412047 152 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 MTND3P21-201ENST00000433774 331 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RPS29P24-201ENST00000486345 171 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC083904.1-201ENST00000487828 231 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC140658.3-201ENST00000567603 271 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC005357.1-201ENST00000588399 301 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC092954.2-201ENST00000609103 430 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC022140.2-201ENST00000623500 188 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 SNORD113-7-201ENST00000363762 77 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.378-201ENST00000365652 113 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU6-601P-201ENST00000384540 107 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU7-187P-201ENST00000458985 68 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 ACA59.1-201ENST00000515966 143 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU6-911P-201ENST00000516523 104 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU7-188P-201ENST00000517063 64 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC004467.1-201ENST00000615678 330 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 MTND5P18-201ENST00000445624 1801 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU4-80P-201ENST00000363200 141 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.341-201ENST00000365341 102 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 SNORD115-44-201ENST00000365391 82 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 MIR181B2-201ENST00000385004 89 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 MIR517B-201ENST00000385102 67 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 SNORD115-47-201ENST00000391226 86 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 SNORD12B-201ENST00000410433 91 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU7-79P-201ENST00000516082 62 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.665-201ENST00000516177 98 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 MIR4423-201ENST00000580922 80 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AL353803.5-201ENST00000599815 141 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 MIR6717-201ENST00000622747 73 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 AC091931.1-201ENST00000623488 728 ntBASIC-0.75□□□□□ -2.53
CHD9Q3L8U1 RNU6-128P-201ENST00000383976 107 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.802-201ENST00000614892 130 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 ERLEC1P1-201ENST00000433806 578 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 USP9YP12-201ENST00000450481 570 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 RNU7-55P-201ENST00000459426 62 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 RNU6-803P-201ENST00000516034 102 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 MIR4509-3-201ENST00000578671 94 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 MIR4473-201ENST00000583731 91 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 MIR4509-2-201ENST00000583920 94 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 AC087752.4-201ENST00000605911 462 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 MIR4509-1-201ENST00000618224 94 ntBASIC-0.76□□□□□ -2.53
CHD9Q3L8U1 MIR20A-201ENST00000362279 71 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 RNA5SP245-201ENST00000364239 121 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 SNORA1-201ENST00000384107 130 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 SNORA26.6-201ENST00000391256 115 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 AC010655.3-201ENST00000478818 450 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 RNU6-86P-201ENST00000606534 107 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 AL357078.3-201ENST00000607528 618 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 AC073534.2-201ENST00000620377 381 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 MIR664B-201ENST00000626756 61 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 BX295541.1-201ENST00000417774 250 ntBASIC-0.77□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 RNU6-597P-201ENST00000365620 102 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 RNU6-281P-201ENST00000384212 103 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 AL442663.2-201ENST00000554385 511 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 AC122108.2-201ENST00000611946 526 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 AC097520.1-201ENST00000624435 385 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 RNU6-214P-201ENST00000384130 107 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 MIR548H1-201ENST00000408610 102 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 AL445193.1-201ENST00000441183 141 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 SNORD36C-201ENST00000516733 66 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 AC006386.1-201ENST00000619436 415 ntBASIC-0.78□□□□□ -2.53
CHD9Q3L8U1 RNU6-1120P-201ENST00000362988 108 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.133-201ENST00000363428 110 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 SNORD115-28-201ENST00000363931 81 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.482-201ENST00000384377 111 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.483-201ENST00000384380 101 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 RNU2-14P-201ENST00000411053 191 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 OSBPL9P5-201ENST00000542581 171 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 MIR3913-1-201ENST00000577744 102 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 AC004223.4-201ENST00000612426 332 ntBASIC-0.78□□□□□ -2.54
CHD9Q3L8U1 SNORD115-25-201ENST00000362619 82 ntBASIC-0.79□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.351-201ENST00000365436 96 ntBASIC-0.79□□□□□ -2.54
CHD9Q3L8U1 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.79□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.79□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 197 ms