Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL354695.1-201ENST00000427935 228 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 HMGN2P32-201ENST00000444648 269 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 MTND1P19-201ENST00000511780 315 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.668-201ENST00000516233 93 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 RNA5SP476-201ENST00000516613 103 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 RNU7-149P-201ENST00000516739 59 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 AC008507.4-201ENST00000585464 127 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 AL513534.2-201ENST00000603836 250 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 GHRLOS.1-201ENST00000610995 70 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 Pinc.1-201ENST00000616452 154 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 AC008133.2-201ENST00000624540 351 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.229-201ENST00000364347 113 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.292-201ENST00000364904 97 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.336-201ENST00000365307 109 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.350-201ENST00000365409 98 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 RNU6-463P-201ENST00000384340 107 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 SNORD38C-201ENST00000384381 69 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 MIR618-201ENST00000385287 98 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.622-201ENST00000411091 108 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 RNU6-453P-201ENST00000516819 85 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 SNORA31.24-201ENST00000517232 57 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 uc_338.4-201ENST00000616635 176 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 MIR8065-201ENST00000620577 100 ntBASIC1.19□□□□□ -2.22
PDLIM3Q53GG5 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.82-201ENST00000363000 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.92-201ENST00000363043 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.235-201ENST00000364412 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.306-201ENST00000365015 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.308-201ENST00000365043 101 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.312-201ENST00000365089 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.322-201ENST00000365151 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.447-201ENST00000384184 113 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.452-201ENST00000384202 108 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 MIR626-201ENST00000385032 94 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 MIR653-201ENST00000385279 96 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 SNORD2.1-201ENST00000458762 69 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.650-201ENST00000459002 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 HAR1A.1-201ENST00000459583 118 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 RNU6-1007P-201ENST00000516586 107 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.777-201ENST00000516982 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 RNU6-165P-201ENST00000517170 99 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 AC100767.1-201ENST00000528178 123 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.771-201ENST00000598668 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.789-201ENST00000622480 102 ntBASIC1.18□□□□□ -2.22
PDLIM3Q53GG5 RNU6-268P-201ENST00000364174 107 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 snoU2_19.4-201ENST00000364329 80 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 RNU6-923P-201ENST00000364753 107 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 SNORA20.1-201ENST00000364790 130 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 MIR570-201ENST00000384917 97 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 MIR526A2-201ENST00000390198 65 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 RNU6-493P-201ENST00000391321 108 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 RNA5SP436-201ENST00000516020 115 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.666-201ENST00000516187 112 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 SNORD111.1-201ENST00000516421 86 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 BX284668.6-201ENST00000606899 438 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 AL442067.1-201ENST00000613261 223 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 MIR7974-201ENST00000615835 79 ntBASIC1.17□□□□□ -2.22
PDLIM3Q53GG5 U8.1-201ENST00000362843 134 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.199-201ENST00000364014 102 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.562-201ENST00000384695 113 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 MIR520C-201ENST00000385005 87 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 snosnR66.1-201ENST00000391095 99 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 RNA5SP496-201ENST00000391240 109 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 RPL39P39-201ENST00000455840 151 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 AC048334.1-201ENST00000477975 159 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 RN7SKP164-201ENST00000516138 266 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 RNU7-181P-201ENST00000517234 74 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 AC087685.1-201ENST00000587507 141 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 AL096861.1-201ENST00000610899 123 ntBASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.16□□□□□ -2.22
PDLIM3Q53GG5 RNA5SP327-201ENST00000362494 101 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 SNORA25.3-201ENST00000363205 127 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 SNORD114-27-201ENST00000363766 70 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 SNORA70.7-201ENST00000384159 133 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.486-201ENST00000384398 107 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.518-201ENST00000384552 113 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.539-201ENST00000384635 107 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 AL606845.1-201ENST00000404881 255 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 MIR1323-201ENST00000408090 73 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 SNRPGP13-201ENST00000442212 177 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 SNORD123-201ENST00000459473 70 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 SCARNA8-201ENST00000515924 131 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 RNU7-25P-201ENST00000516544 62 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 RNU6-111P-201ENST00000517179 105 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 MIR4282-201ENST00000583613 67 ntBASIC1.15□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.262-201ENST00000364641 102 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.304-201ENST00000365011 112 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 MIR222-201ENST00000384992 110 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 MIR758-201ENST00000390227 88 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 172.2 ms