Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL513423.1-201ENST00000621695 132 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1123P-201ENST00000362347 106 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.44-201ENST00000362676 108 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 RNU6-1272P-201ENST00000362776 107 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 RNU6-899P-201ENST00000363947 107 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 RNU6-740P-201ENST00000364734 105 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 RNU6-472P-201ENST00000384299 107 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.477-201ENST00000384352 108 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 RNU6-922P-201ENST00000516753 99 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 AL358944.1-201ENST00000528537 144 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 AL161670.1-201ENST00000554348 137 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 AC120024.3-201ENST00000603167 156 ntBASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
PDLIM3Q53GG5 MIRLET7C-201ENST00000362160 84 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.133-201ENST00000363428 110 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 RNU6-1209P-201ENST00000363655 107 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 MIR522-201ENST00000385071 87 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 MIR1302-3-201ENST00000408128 138 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 MTCYBP9-201ENST00000431021 303 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 MTND4LP30-201ENST00000454092 297 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 AC023790.1-201ENST00000482174 347 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 MTCO2P24-201ENST00000515611 426 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 MIR5692C2-201ENST00000577959 77 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 AC012433.1-201ENST00000588916 398 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 AL008718.3-201ENST00000610217 321 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 AC013791.1-201ENST00000616619 62 ntBASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.32□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.277-201ENST00000364754 102 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.288-201ENST00000364854 92 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 SNORD50B-201ENST00000364995 70 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 SNORD26-201ENST00000384147 75 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 MIR516B2-201ENST00000385190 85 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 MIR802-201ENST00000390235 94 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 MIR891A-201ENST00000401237 79 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 RPL30P13-201ENST00000418873 348 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 MTND3P2-201ENST00000438452 342 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 RNU6-947P-201ENST00000516264 106 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.679-201ENST00000516416 91 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 SNORD45.4-201ENST00000516629 73 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 RNU1-92P-201ENST00000517017 135 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 FAM106DP-201ENST00000586416 501 ntBASIC1.31□□□□□ -2.2
PDLIM3Q53GG5 AC068700.1-201ENST00000565862 3754 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 MIR302D-201ENST00000362275 68 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 MIR367-201ENST00000362299 68 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 RNU6-199P-201ENST00000362954 107 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.251-201ENST00000364551 99 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 RNU6-211P-201ENST00000384047 107 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.433-201ENST00000384089 102 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.590-201ENST00000410140 107 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 RNU6-955P-201ENST00000410497 104 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 SNX2P2-201ENST00000424553 323 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 CYCTP-201ENST00000504253 315 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 MIR151B-201ENST00000584249 96 ntBASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.14-201ENST00000362415 103 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 SNORD27-201ENST00000363981 72 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 RNU1-42P-201ENST00000364033 160 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.217-201ENST00000364214 105 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.275-201ENST00000364726 110 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 RNU6-196P-201ENST00000384315 107 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.572-201ENST00000384757 98 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 AL603910.2-201ENST00000407268 136 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 RN7SKP101-201ENST00000411376 320 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.641-201ENST00000459414 105 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 MIR4421-201ENST00000578133 69 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 AC006006.1-201ENST00000603082 144 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 AL049861.1-201ENST00000603130 150 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 AL645939.4-201ENST00000604495 135 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 U2.14-201ENST00000615943 113 ntBASIC1.29□□□□□ -2.2
PDLIM3Q53GG5 MIR26B-201ENST00000362251 77 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.24-201ENST00000362508 103 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 snoU2-30.1-201ENST00000365012 70 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 RNU6-1065P-201ENST00000384513 106 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 RPS27P16-201ENST00000425758 201 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 AC027119.1-201ENST00000440877 241 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 RPS29P1-201ENST00000465274 159 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 RNU6-917P-201ENST00000516294 104 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 Y_RNA.714-201ENST00000517065 90 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 AL160236.1-201ENST00000556317 195 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 MIR4724-201ENST00000579485 89 ntBASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
PDLIM3Q53GG5 ZNF209P-201ENST00000593450 2304 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 MIR96-201ENST00000362288 78 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 SNORD14E-201ENST00000364009 85 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 RNU6-60P-201ENST00000364792 103 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 RNU6-53P-201ENST00000365367 106 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 MIR526A1-201ENST00000384897 85 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 MIR1298-201ENST00000408783 112 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 SNORD127-201ENST00000458892 86 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 MIR4503-201ENST00000582187 83 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 RN7SL793P-201ENST00000583259 296 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 172.3 ms