Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL080274.1-201ENST00000605565 220 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.39-201ENST00000362620 98 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 RNU6-937P-201ENST00000384325 106 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 MIR518E-201ENST00000385252 88 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 MTND1P14-201ENST00000427400 950 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 AL160004.2-201ENST00000432935 350 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 AL157398.1-201ENST00000452981 186 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.632-201ENST00000459189 102 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 AC010655.3-201ENST00000478818 450 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.661-201ENST00000516003 99 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 AC011195.1-201ENST00000578177 177 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 MIR4300-201ENST00000581016 96 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 MIR2681-201ENST00000581814 105 ntBASIC0.58□□□□□ -2.32
CCDC40Q4G0X9 RNU6-1048P-201ENST00000364054 107 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 SNORD63-201ENST00000384262 68 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 SNORA51.10-201ENST00000384418 136 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 SNORD105-201ENST00000386910 85 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 SNORD72-201ENST00000390994 80 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 MTCO2P33-201ENST00000402100 465 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 SNORA36B-201ENST00000410438 131 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 RNU6-437P-201ENST00000459408 95 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 SNORA40.14-201ENST00000516543 86 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 RNU7-181P-201ENST00000517234 74 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 RPL23AP91-201ENST00000569211 455 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 AL138825.1-201ENST00000618587 192 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 AL606534.2-204ENST00000635008 178 ntBASIC0.57□□□□□ -2.32
CCDC40Q4G0X9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 MIR1-1-201ENST00000362147 71 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.168-201ENST00000363740 102 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 RNU6-674P-201ENST00000363831 107 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 RNU1-115P-201ENST00000365329 160 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 RNU6-396P-201ENST00000365369 105 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.439-201ENST00000384119 94 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.537-201ENST00000384626 109 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 RNU6-21P-201ENST00000384710 107 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 RNU2-14P-201ENST00000411053 191 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 RNU7-141P-201ENST00000459304 62 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 SNORD19B-201ENST00000459623 84 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 MIR548AO-201ENST00000579992 96 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 AC104695.3-201ENST00000604052 296 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 SNORD58B-201ENST00000607313 66 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 AC015726.2-201ENST00000620112 122 ntBASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.70-201ENST00000362886 110 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.143-201ENST00000363520 106 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.252-201ENST00000364556 101 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 RNU6-945P-201ENST00000383947 107 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 AL603910.2-201ENST00000407268 136 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 RNU6-1132P-201ENST00000459214 107 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.673-201ENST00000516306 88 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 AC018659.1-201ENST00000551083 169 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 MIR4791-201ENST00000607666 84 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 AC006441.5-201ENST00000612680 209 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 MTND1P7-201ENST00000632801 297 ntBASIC0.55□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.80-201ENST00000362996 102 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 RNU4-50P-201ENST00000364361 141 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 RNU6-1283P-201ENST00000365314 105 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.383-201ENST00000383855 97 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 SNORA72.4-201ENST00000384174 132 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.485-201ENST00000384395 102 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 RNA5SP222-201ENST00000411039 105 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 U8.20-201ENST00000459445 131 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 FGF7P4-201ENST00000509595 295 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 RNA5SP436-201ENST00000516020 115 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 AC022709.1-201ENST00000615967 87 ntBASIC0.54□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.5-201ENST00000362334 102 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 RNU4-80P-201ENST00000363200 141 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 RNA5SP499-201ENST00000363982 119 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 RNU6-801P-201ENST00000364087 105 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 RNU1-133P-201ENST00000364867 167 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.355-201ENST00000365462 98 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.508-201ENST00000384502 114 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 SNORD11-201ENST00000459124 84 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 RNU4-57P-201ENST00000515980 135 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 RNU6-229P-201ENST00000516614 102 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 Y_RNA.713-201ENST00000517013 96 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 AC005357.1-201ENST00000588399 301 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 Z83818.1-201ENST00000603584 150 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
CCDC40Q4G0X9 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 RNA5SP347-201ENST00000362445 119 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 RNU6-369P-201ENST00000362515 102 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 SNORA72.1-201ENST00000363485 129 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.286-201ENST00000364813 102 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 SNORA1.2-201ENST00000365189 134 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 RNY3-201ENST00000365484 102 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 AC098934.3-201ENST00000430450 190 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 POLR2KP2-201ENST00000438155 177 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 RNU6-1007P-201ENST00000516586 107 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 194.2 ms