Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR4635-201ENST00000583759 79 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR4765-201ENST00000585007 77 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC073413.2-201ENST00000604332 360 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC242852.1-201ENST00000612151 96 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC244015.1-201ENST00000622301 99 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC018630.2-201ENST00000534866 2403 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 Y_RNA.507-201ENST00000384500 99 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-1104P-201ENST00000384723 104 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU4-53P-201ENST00000410828 140 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 HMGN2P16-201ENST00000456802 261 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU7-61P-201ENST00000515897 61 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR3683-201ENST00000580847 82 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR4305-201ENST00000583252 102 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 XIST_intron.1-201ENST00000619444 68 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 U6.98-201ENST00000637157 84 ntBASIC3.56□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 FAM35CP-201ENST00000554755 2470 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 Y_RNA.96-201ENST00000363092 109 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 Y_RNA.224-201ENST00000364308 111 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 SNORD114-30-201ENST00000364448 72 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR548O-201ENST00000408583 114 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 ARF4P2-201ENST00000430209 526 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC099677.2-201ENST00000436385 175 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 SNORA4.4-201ENST00000515921 135 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC022523.2-201ENST00000561045 150 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR4778-201ENST00000577635 80 ntBASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AL451046.2-201ENST00000403074 277 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC004941.2-201ENST00000427009 228 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC009238.1-201ENST00000442165 424 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC009237.6-201ENST00000446969 424 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNA5SP57-201ENST00000459463 123 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU7-6P-201ENST00000516845 62 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AL358944.1-201ENST00000528537 144 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 U7.3-201ENST00000616123 62 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC002546.1-201ENST00000588041 2504 ntBASIC3.54□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR126-201ENST00000362291 85 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNA5SP289-201ENST00000362332 137 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 Y_RNA.73-201ENST00000362910 113 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 SNORA33-201ENST00000363664 130 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU1-96P-201ENST00000364163 162 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-675P-201ENST00000384236 104 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-851P-201ENST00000384565 107 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AP000567.1-201ENST00000406413 156 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-938P-201ENST00000411285 103 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 POLR2J4-204ENST00000418424 324 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RN7SL297P-201ENST00000483161 293 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 SNORA31.21-201ENST00000517180 77 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-586P-201ENST00000517265 104 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR4694-201ENST00000578534 80 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 WWP1P1-201ENST00000466609 2769 ntBASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 SNORD115-28-201ENST00000363931 81 ntBASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-644P-201ENST00000391155 98 ntBASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC073261.1-201ENST00000429409 121 ntBASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 HMGN2P18-201ENST00000450680 270 ntBASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RPL23AP42-201ENST00000471152 471 ntBASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU7-99P-201ENST00000516271 62 ntBASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-1291P-201ENST00000516591 104 ntBASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 U2.20-201ENST00000613956 192 ntBASIC3.52□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 Y_RNA.531-201ENST00000384589 121 ntBASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-1186P-201ENST00000410429 97 ntBASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 FTH1P12-201ENST00000432137 551 ntBASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 HMGN2P34-201ENST00000437647 269 ntBASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU7-80P-201ENST00000459562 61 ntBASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC019288.1-201ENST00000557918 224 ntBASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.51□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 Y_RNA.37-201ENST00000362606 108 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-170P-201ENST00000362832 104 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-979P-201ENST00000383896 107 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-787P-201ENST00000384032 107 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 Y_RNA.454-201ENST00000384224 113 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 SNORD116-22-201ENST00000384430 92 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC113410.1-201ENST00000505029 247 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-857P-201ENST00000515893 110 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-162P-201ENST00000516228 103 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-856P-201ENST00000516959 98 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MIR4666B-201ENST00000578142 81 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms