Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 U8.7-201ENST00000364940 136 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 Y_RNA.422-201ENST00000384054 114 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 SNORD26-201ENST00000384147 75 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 SNORD41-201ENST00000386967 70 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
LIME1Q9H400 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.15□□□□□ -2.23
LIME1Q9H400 MTND4LP30-201ENST00000454092 297 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 RPS29P23-201ENST00000458635 123 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
LIME1Q9H400 AC090049.2-201ENST00000550377 109 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 MIR3664-201ENST00000579074 99 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 FAM106DP-201ENST00000586416 501 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 POLR3GP1-201ENST00000594073 261 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 AL513534.2-201ENST00000603836 250 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.15□□□□□ -2.23
LIME1Q9H400 RNU6-326P-201ENST00000365480 107 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 Y_RNA.569-201ENST00000384749 103 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 MIR215-201ENST00000384858 110 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 SNORA26.5-201ENST00000391215 123 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 MIR891A-201ENST00000401237 79 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 RNU6-955P-201ENST00000410497 104 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 RNU2-14P-201ENST00000411053 191 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 AC113618.1-201ENST00000416747 285 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 RNU7-141P-201ENST00000459304 62 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 AC004223.1-201ENST00000479840 271 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.14□□□□□ -2.23
LIME1Q9H400 AP003733.2-201ENST00000529409 171 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.14□□□□□ -2.23
LIME1Q9H400 AL160236.1-201ENST00000556317 195 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 AC005357.1-201ENST00000588399 301 ntBASIC1.14□□□□□ -2.23
LIME1Q9H400 SNORD68-201ENST00000363214 84 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNU6-674P-201ENST00000363831 107 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNU6-694P-201ENST00000364071 147 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 Y_RNA.203-201ENST00000364106 102 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNU6-1160P-201ENST00000384546 104 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 MIR758-201ENST00000390227 88 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 MIR548F4-201ENST00000408515 105 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 Y_RNA.621-201ENST00000411065 96 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 AC098869.1-201ENST00000481627 292 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNA5SP436-201ENST00000516020 115 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNU7-12P-201ENST00000516030 62 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNY3P15-201ENST00000516297 97 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNU2-31P-201ENST00000516954 155 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNU6-165P-201ENST00000517170 99 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 RNU6-1116P-201ENST00000517269 99 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 AL442663.2-201ENST00000554385 511 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.13□□□□□ -2.23
LIME1Q9H400 AC106754.2-201ENST00000623006 233 ntBASIC1.13□□□□□ -2.23
LIME1Q9H400 MIR26B-201ENST00000362251 77 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 RNU6-1272P-201ENST00000362776 107 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 Y_RNA.64-201ENST00000362845 102 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 Y_RNA.84-201ENST00000363011 104 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 SNORA2.2-201ENST00000365473 135 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 Y_RNA.518-201ENST00000384552 113 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 MIR526A1-201ENST00000384897 85 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
LIME1Q9H400 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.12□□□□□ -2.23
LIME1Q9H400 AC093850.1-201ENST00000454121 251 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 AC117454.1-201ENST00000491120 168 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 AC114811.1-201ENST00000507207 168 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 Y_RNA.812-201ENST00000610788 101 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 Y_RNA.784-201ENST00000613803 101 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 Y_RNA.787-201ENST00000616522 101 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 Y_RNA.780-201ENST00000617336 101 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 Y_RNA.801-201ENST00000619005 101 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 MIR6767-201ENST00000637302 66 ntBASIC1.12□□□□□ -2.23
LIME1Q9H400 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
LIME1Q9H400 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.11□□□□□ -2.23
LIME1Q9H400 SNORA63-201ENST00000363450 132 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 RNU6-1048P-201ENST00000364054 107 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 Y_RNA.217-201ENST00000364214 105 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 RNU6-763P-201ENST00000390865 106 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 SNORA40.6-201ENST00000391153 128 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 MIR548J-201ENST00000408833 112 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 RNU6-1203P-201ENST00000410703 110 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 PIGPP3-201ENST00000425307 415 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 Y_RNA.641-201ENST00000459414 105 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 RPL23AP54-201ENST00000495129 419 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 AC091959.1-201ENST00000495857 238 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.11□□□□□ -2.23
LIME1Q9H400 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.11□□□□□ -2.23
LIME1Q9H400 CYP3A52P-201ENST00000563326 91 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 MIR3660-201ENST00000584845 100 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 AC087685.1-201ENST00000587507 141 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 AC006504.6-201ENST00000590142 199 ntBASIC1.11□□□□□ -2.23
LIME1Q9H400 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
LIME1Q9H400 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.1□□□□□ -2.23
LIME1Q9H400 UBE2WP1-201ENST00000362030 340 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 RNU6-899P-201ENST00000363947 107 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 SNORA63C-201ENST00000364578 129 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 Y_RNA.336-201ENST00000365307 109 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 RNU6-1011P-201ENST00000384668 107 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 MIR452-201ENST00000385020 85 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 SNORA53-201ENST00000391141 249 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 RNU6-1109P-201ENST00000391187 107 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 SNORA36B-201ENST00000410438 131 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 SNRPGP10-201ENST00000432323 225 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 HMGN2P32-201ENST00000444648 269 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 RNU6-437P-201ENST00000459408 95 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 208.9 ms