Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC024405.2-202ENST00000532731 184 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 AC006600.1-201ENST00000572529 153 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 AC011195.1-201ENST00000578177 177 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 MIR4300-201ENST00000581016 96 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 AC092794.1-201ENST00000612734 582 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 AC007742.2-201ENST00000618226 398 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 MTND4LP32-201ENST00000636111 270 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 Y_RNA.118-201ENST00000363300 101 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 RNU1-133P-201ENST00000364867 167 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 U8.7-201ENST00000364940 136 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 Y_RNA.456-201ENST00000384232 111 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 RNU6-1067P-201ENST00000384752 107 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 RNU1-119P-201ENST00000391122 165 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 AC005534.2-201ENST00000431047 433 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 RPL23AP54-201ENST00000495129 419 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 VN1R91P-201ENST00000594377 169 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 DEFB117-201ENST00000602356 141 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 AC025253.1-201ENST00000613623 543 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 JPX_2.1-201ENST00000614161 69 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 AC022709.1-201ENST00000615967 87 ntBASIC0.63□□□□□ -2.31
CCDC43Q96MW1 RNU6-1209P-201ENST00000363655 107 ntBASIC0.62□□□□□ -2.31
CCDC43Q96MW1 Y_RNA.331-201ENST00000365267 102 ntBASIC0.62□□□□□ -2.31
CCDC43Q96MW1 Y_RNA.355-201ENST00000365462 98 ntBASIC0.62□□□□□ -2.31
CCDC43Q96MW1 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
CCDC43Q96MW1 AC244098.3-201ENST00000424803 96 ntBASIC0.62□□□□□ -2.31
CCDC43Q96MW1 MIR4423-201ENST00000580922 80 ntBASIC0.62□□□□□ -2.31
CCDC43Q96MW1 AP003357.1-201ENST00000604497 148 ntBASIC0.62□□□□□ -2.31
CCDC43Q96MW1 Pinc.1-201ENST00000616452 154 ntBASIC0.62□□□□□ -2.31
CCDC43Q96MW1 MIR6515-201ENST00000619843 57 ntBASIC0.62□□□□□ -2.31
CCDC43Q96MW1 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.62□□□□□ -2.31
CCDC43Q96MW1 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
CCDC43Q96MW1 SNORD81.1-201ENST00000363064 77 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 Y_RNA.259-201ENST00000364619 101 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 RNU6-442P-201ENST00000383968 104 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 MIR802-201ENST00000390235 94 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 MIR1827-201ENST00000408549 66 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 AF228730.4-201ENST00000421457 183 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 RNU7-115P-201ENST00000516433 55 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 AL355375.2-201ENST00000574825 175 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 AL355073.2-201ENST00000612106 557 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 AC091925.1-201ENST00000623204 462 ntBASIC0.61□□□□□ -2.31
CCDC43Q96MW1 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
CCDC43Q96MW1 MIR1-1-201ENST00000362147 71 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 SNORD105-201ENST00000386910 85 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 U8.17-201ENST00000391292 132 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 RNU6-613P-201ENST00000410412 108 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 RNA5SP222-201ENST00000411039 105 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.6□□□□□ -2.31
CCDC43Q96MW1 SNRPGP14-201ENST00000435400 219 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.6□□□□□ -2.31
CCDC43Q96MW1 RNU6-1132P-201ENST00000459214 107 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 NDUFA4P2-201ENST00000489989 244 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.6□□□□□ -2.31
CCDC43Q96MW1 AC087685.1-201ENST00000587507 141 ntBASIC0.6□□□□□ -2.31
CCDC43Q96MW1 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.6□□□□□ -2.31
CCDC43Q96MW1 RNU6-268P-201ENST00000364174 107 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 RNU6-945P-201ENST00000383947 107 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 RNU6-733P-201ENST00000410759 104 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 AC024067.1-201ENST00000426199 223 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.59□□□□□ -2.31
CCDC43Q96MW1 AL157398.1-201ENST00000452981 186 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 HMGN1P10-201ENST00000474557 553 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.59□□□□□ -2.31
CCDC43Q96MW1 RNU6-830P-201ENST00000516353 107 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 RNU6-229P-201ENST00000516614 102 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 MIR2115-201ENST00000516657 100 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 AC127455.1-201ENST00000565496 145 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 AC010205.1-201ENST00000616668 449 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 MIR5087-201ENST00000635826 76 ntBASIC0.59□□□□□ -2.31
CCDC43Q96MW1 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.387-201ENST00000383918 102 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.428-201ENST00000384078 102 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.462-201ENST00000384268 102 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.619-201ENST00000410951 90 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 AC098614.3-201ENST00000438957 440 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 AC018659.1-201ENST00000551083 169 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 MIR3145-201ENST00000580727 82 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 AC104695.3-201ENST00000604052 296 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.772-201ENST00000606692 102 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 AC011373.1-201ENST00000607270 237 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 MIR548AY-201ENST00000617669 107 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 MIR6513-201ENST00000621188 64 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 MIR4272-201ENST00000635924 64 ntBASIC0.58□□□□□ -2.32
CCDC43Q96MW1 RNU6-396P-201ENST00000365369 105 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.354-201ENST00000365448 111 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 RNU6-1040P-201ENST00000383974 107 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 SNORA36.2-201ENST00000384004 127 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 SNORD116-29-201ENST00000384516 83 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 RNY4P36-201ENST00000391116 96 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 MIR1278-201ENST00000408753 81 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 RNU7-110P-201ENST00000516891 62 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 SNORD116.3-201ENST00000517176 78 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 RNU7-181P-201ENST00000517234 74 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 MIR548AO-201ENST00000579992 96 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 MIR5188-201ENST00000583467 113 ntBASIC0.57□□□□□ -2.32
CCDC43Q96MW1 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
CCDC43Q96MW1 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 245.5 ms