Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC108706.1-201ENST00000611053 297 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 AL391903.3-201ENST00000612158 163 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 AC025253.1-201ENST00000613623 543 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.81□□□□□ -2.28
SHMT2P34897 Y_RNA.142-201ENST00000363491 102 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 SNORD114-2-201ENST00000363953 78 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 Y_RNA.224-201ENST00000364308 111 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 Y_RNA.230-201ENST00000364348 109 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 Y_RNA.253-201ENST00000364562 112 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 Y_RNA.387-201ENST00000383918 102 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 SNORA80D-201ENST00000384488 135 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 RNU6-1105P-201ENST00000384774 107 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 MIR452-201ENST00000385020 85 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 AC245047.8-201ENST00000456455 284 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 RNU6-699P-201ENST00000517081 110 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 MIR3192-201ENST00000584920 77 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 AC022441.3-201ENST00000605737 136 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 AL020996.3-201ENST00000606617 222 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 AL132765.2-201ENST00000610812 351 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 AC122108.2-201ENST00000611946 526 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.8□□□□□ -2.28
SHMT2P34897 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
SHMT2P34897 HSBP1P2-201ENST00000299671 229 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 RNU6-324P-201ENST00000363957 106 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 RNU1-36P-201ENST00000365130 165 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 SNORA75.2-201ENST00000391138 150 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 SNORA75.3-201ENST00000391231 150 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 MIR1298-201ENST00000408783 112 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.79□□□□□ -2.28
SHMT2P34897 Y_RNA.718-201ENST00000517110 102 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 AC022616.4-201ENST00000522985 181 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 AC013244.2-201ENST00000603396 103 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 PRELID3BP2-201ENST00000605362 201 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
SHMT2P34897 MIR4272-201ENST00000635924 64 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 MIR1302-1-201ENST00000637932 143 ntBASIC0.79□□□□□ -2.28
SHMT2P34897 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.78□□□□□ -2.28
SHMT2P34897 Y_RNA.570-201ENST00000384750 101 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 MIR522-201ENST00000385071 87 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 MIR146A-201ENST00000385201 99 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 RPS20P10-201ENST00000451209 253 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.78□□□□□ -2.28
SHMT2P34897 RNU7-21P-201ENST00000459430 62 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 AC082651.2-201ENST00000496833 166 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 RNU6-351P-201ENST00000516097 100 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 AC006600.1-201ENST00000572529 153 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 MIR4423-201ENST00000580922 80 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 VN1R91P-201ENST00000594377 169 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 RBM11P1-201ENST00000604951 799 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.78□□□□□ -2.28
SHMT2P34897 AC008163.1-202ENST00000636004 2889 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 RNU6-1115P-201ENST00000362490 106 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 Y_RNA.463-201ENST00000384271 102 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 AC004941.2-201ENST00000427009 228 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.77□□□□□ -2.29
SHMT2P34897 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.77□□□□□ -2.29
SHMT2P34897 RNU7-152P-201ENST00000458982 64 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 RPS29P1-201ENST00000465274 159 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 RN7SKP295-201ENST00000517264 153 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 UBE2V2P2-201ENST00000587677 504 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 AC005972.2-201ENST00000604690 348 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 AC084781.2-201ENST00000615568 161 ntBASIC0.77□□□□□ -2.29
SHMT2P34897 SNORD114-24-201ENST00000365029 72 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 RNU6-1175P-201ENST00000365200 107 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 Y_RNA.329-201ENST00000365209 107 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 AC117470.1-201ENST00000381974 330 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 SNORA72-201ENST00000384339 132 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 Y_RNA.496-201ENST00000384444 101 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 MIR200A-201ENST00000384875 90 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 MIR516B2-201ENST00000385190 85 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 MCFD2P1-201ENST00000417812 300 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 AC090142.3-201ENST00000519012 385 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 AC005730.3-201ENST00000583067 366 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 AC091925.1-201ENST00000623204 462 ntBASIC0.76□□□□□ -2.29
SHMT2P34897 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.76□□□□□ -2.29
SHMT2P34897 AL442644.1-201ENST00000454390 3105 ntBASIC0.75□□□□□ -2.29
SHMT2P34897 RNU2-64P-201ENST00000411315 191 ntBASIC0.75□□□□□ -2.29
SHMT2P34897 AC005042.3-201ENST00000453230 174 ntBASIC0.75□□□□□ -2.29
SHMT2P34897 AP003716.2-201ENST00000528260 108 ntBASIC0.75□□□□□ -2.29
SHMT2P34897 MIR6866-201ENST00000638146 69 ntBASIC0.75□□□□□ -2.29
SHMT2P34897 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.75□□□□□ -2.29
SHMT2P34897 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.74□□□□□ -2.29
SHMT2P34897 SNORA72.1-201ENST00000363485 129 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 Y_RNA.384-201ENST00000383909 102 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 Y_RNA.428-201ENST00000384078 102 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 RNU6-855P-201ENST00000410395 104 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.74□□□□□ -2.29
SHMT2P34897 RNU7-90P-201ENST00000459216 62 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 PDCD5P2-201ENST00000507570 312 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 SNORD45.4-201ENST00000516629 73 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 SNORA74.3-201ENST00000517108 154 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 CYP3A137P-201ENST00000562436 69 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 AL355375.2-201ENST00000574825 175 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.74□□□□□ -2.29
SHMT2P34897 AC010205.1-201ENST00000616668 449 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 MIR6788-201ENST00000618842 66 ntBASIC0.74□□□□□ -2.29
SHMT2P34897 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
SHMT2P34897 Y_RNA.70-201ENST00000362886 110 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 270.9 ms