Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-750P-201ENST00000390946 107 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 SNORA26-201ENST00000391286 122 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 RNA5SP511-201ENST00000410487 115 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 SNORD11-201ENST00000459124 84 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 AC010598.1-201ENST00000510378 103 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 RNA5SP20-201ENST00000515976 84 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 RNA5SP236-201ENST00000516169 116 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 RN7SKP12-201ENST00000516275 143 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 SNORD19.2-201ENST00000516978 73 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 RNU6-365P-201ENST00000517113 106 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 AC007751.1-201ENST00000529260 376 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 RPL17P51-201ENST00000605218 238 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 RNU6-94P-201ENST00000607728 107 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 MIR8057-201ENST00000620957 69 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 AL035470.1-201ENST00000622571 220 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 AC026241.1-201ENST00000517873 2142 ntBASIC3.28□□□□□ -1.89
CCDC39Q9UFE4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 SNORD14D-201ENST00000384390 87 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 RNU6-851P-201ENST00000384565 107 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 AC023449.1-201ENST00000454464 154 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 RNU7-57P-201ENST00000459540 60 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 AC010531.2-201ENST00000465012 153 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 SCGB1D5P-201ENST00000515134 247 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 AC027419.1-201ENST00000522976 328 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 AC015720.1-201ENST00000565251 277 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 MIR3651-201ENST00000630427 90 ntBASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC39Q9UFE4 AC010889.1-201ENST00000566193 2666 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 RNU6-655P-201ENST00000362858 107 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 SNORA63.5-201ENST00000363548 123 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 RNU4-13P-201ENST00000364019 141 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.203-201ENST00000364106 102 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 MIR29B2-201ENST00000385055 81 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 AC080013.2-201ENST00000460866 323 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 COX6CP6-201ENST00000490840 228 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 SNORA9.3-201ENST00000516383 129 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 SCARNA13-201ENST00000516672 275 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 RNU6-1098P-201ENST00000516772 96 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 snoMBII-202.2-201ENST00000517263 86 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 Pinc.1-201ENST00000616452 154 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 AC015726.2-201ENST00000620112 122 ntBASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC39Q9UFE4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 AC096644.4-201ENST00000563417 2912 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 AC073346.2-201ENST00000624724 2058 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.49-201ENST00000362714 112 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.66-201ENST00000362862 102 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.111-201ENST00000363248 100 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 SNORA25.6-201ENST00000364121 118 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.220-201ENST00000364244 109 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 MIR512-1-201ENST00000384913 84 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 SNORA11-201ENST00000408789 128 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 AL441985.1-201ENST00000457727 251 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 MRPS36P2-201ENST00000512569 299 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 RNU6-109P-201ENST00000516364 107 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 RNU6-184P-201ENST00000516514 107 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 MIR2681-201ENST00000581814 105 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 MIR5195-201ENST00000583555 115 ntBASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.796-201ENST00000364268 102 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.799-201ENST00000364992 102 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 RNU6-820P-201ENST00000384273 107 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.486-201ENST00000384398 107 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 MIR590-201ENST00000385008 97 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 AC245102.2-201ENST00000448956 180 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 SEM1P1-201ENST00000506694 209 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 RNA5SP341-201ENST00000516261 117 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 RNU5F-4P-201ENST00000516581 114 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 RNU7-149P-201ENST00000516739 59 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 RN7SKP57-201ENST00000517248 293 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 AL162274.2-201ENST00000614406 332 ntBASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC39Q9UFE4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 AL589743.1-201ENST00000551932 2712 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 RNU6-1138P-201ENST00000365359 106 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 RNU6-117P-201ENST00000365415 107 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 SNORA1-201ENST00000384107 130 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 RNU6-1152P-201ENST00000384576 107 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 MIR562-201ENST00000384894 95 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 MIR450A2-201ENST00000385022 100 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 MIR1283-1-201ENST00000408494 87 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 258.8 ms