Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
NKX3-1Q99801 RNU6-271P-201ENST00000363858 105 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 Y_RNA.422-201ENST00000384054 114 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 RNU6-21P-201ENST00000384710 107 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
NKX3-1Q99801 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.51□□□□□ -2.17
NKX3-1Q99801 AL135790.2-201ENST00000437701 267 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 MTND5P22-201ENST00000458380 195 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 SEPT14P8-201ENST00000508026 178 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 SNORA40.15-201ENST00000516884 107 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 AC006504.6-201ENST00000590142 199 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 AL929325.1-201ENST00000603096 117 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 AL353621.2-201ENST00000605340 133 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 SNORD113-5-201ENST00000607261 78 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 AC095038.3-201ENST00000634439 195 ntBASIC1.51□□□□□ -2.17
NKX3-1Q99801 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
NKX3-1Q99801 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.51□□□□□ -2.17
NKX3-1Q99801 Y_RNA.383-201ENST00000383855 97 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 RNU6-738P-201ENST00000384531 106 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 RNU6-376P-201ENST00000384731 106 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 U8.13-201ENST00000390842 128 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 SNORA12.1-201ENST00000390873 148 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 AL390729.2-201ENST00000416137 156 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 DYNLT3P2-201ENST00000442517 295 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 SUMO1P2-201ENST00000452524 304 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.5□□□□□ -2.17
NKX3-1Q99801 Y_RNA.720-201ENST00000517166 92 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.5□□□□□ -2.17
NKX3-1Q99801 CBX3P4-201ENST00000538909 354 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 AL442663.2-201ENST00000554385 511 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 AC091178.2-201ENST00000584401 117 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 AC008737.2-201ENST00000599446 118 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 AL360085.1-201ENST00000604713 532 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 MIR8054-201ENST00000620877 86 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 MIR6079-201ENST00000635807 62 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 AC018630.2-201ENST00000534866 2403 ntBASIC1.5□□□□□ -2.17
NKX3-1Q99801 SNORD114-7-201ENST00000362520 77 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 Y_RNA.140-201ENST00000363474 103 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 Y_RNA.418-201ENST00000384029 102 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 RNU6-203P-201ENST00000384038 104 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 Y_RNA.541-201ENST00000384640 113 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 AC245047.3-201ENST00000429428 127 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.49□□□□□ -2.17
NKX3-1Q99801 AC025465.3-201ENST00000510570 311 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 RNA5SP182-201ENST00000516064 82 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 SNORA25.15-201ENST00000516487 89 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 RNU6-1291P-201ENST00000516591 104 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 AC015720.1-201ENST00000565251 277 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 MIR3198-2-201ENST00000577868 80 ntBASIC1.49□□□□□ -2.17
NKX3-1Q99801 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
NKX3-1Q99801 Y_RNA.16-201ENST00000362421 102 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 RNU4-80P-201ENST00000363200 141 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 RNU6-238P-201ENST00000363313 106 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 Y_RNA.267-201ENST00000364679 109 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 Y_RNA.276-201ENST00000364732 109 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 RNU6-440P-201ENST00000390882 105 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 Y_RNA.581-201ENST00000391017 97 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 RNU6-1109P-201ENST00000391187 107 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 SNORA26.9-201ENST00000391322 122 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 MIR934-201ENST00000401241 83 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 HSPE1P21-201ENST00000438283 308 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 AC069257.2-201ENST00000441819 155 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 HMGN2P23-201ENST00000456759 269 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 AC008834.1-201ENST00000511612 175 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 RNU6-1278P-201ENST00000516130 107 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 AP003733.2-201ENST00000529409 171 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 RPL21P9-201ENST00000556149 474 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 MIR4719-201ENST00000585233 84 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 AC004832.4-201ENST00000608952 331 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 AC084768.2-201ENST00000622736 221 ntBASIC1.48□□□□□ -2.17
NKX3-1Q99801 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
NKX3-1Q99801 RNU6-360P-201ENST00000390944 104 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 RNU6-482P-201ENST00000391068 107 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 RNU6-855P-201ENST00000410395 104 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 MTND2P23-201ENST00000422990 651 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 AL162725.1-201ENST00000435405 301 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 POLR2KP2-201ENST00000438155 177 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 RPS4XP11-201ENST00000446897 772 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 HSPE1P13-201ENST00000451143 297 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 RPS20P10-201ENST00000451209 253 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 snoU13.27-201ENST00000459278 104 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 AC005908.1-201ENST00000468701 347 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 HMGN1P10-201ENST00000474557 553 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 SNORA70.12-201ENST00000516084 153 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 RNU6-635P-201ENST00000516651 102 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 RNU6-1096P-201ENST00000517089 102 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 SNORA77B-201ENST00000578179 125 ntBASIC1.47□□□□□ -2.17
NKX3-1Q99801 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.47□□□□□ -2.17
NKX3-1Q99801 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.47□□□□□ -2.17
NKX3-1Q99801 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
NKX3-1Q99801 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
NKX3-1Q99801 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
NKX3-1Q99801 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.46□□□□□ -2.18
NKX3-1Q99801 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
NKX3-1Q99801 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
NKX3-1Q99801 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
NKX3-1Q99801 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
NKX3-1Q99801 SNORA1B-201ENST00000362535 133 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 Y_RNA.84-201ENST00000363011 104 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms