Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 MIR22-201ENST00000362190 85 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 Y_RNA.549-201ENST00000384657 102 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC063976.3-201ENST00000426849 329 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL135938.1-201ENST00000443141 297 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC109327.2-201ENST00000448339 378 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RPL39P34-201ENST00000477141 156 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SNORD19.2-201ENST00000516978 73 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 HSPE1P18-201ENST00000517602 280 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL365205.2-201ENST00000594586 68 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC025521.1-201ENST00000621624 286 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC073476.4-201ENST00000628409 72 ntBASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.99□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL356292.1-201ENST00000283110 373 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 Y_RNA.323-201ENST00000365157 109 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 MIR196B-201ENST00000384852 84 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RPL21P3-201ENST00000395517 478 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 COX6CP6-201ENST00000490840 228 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-1146P-201ENST00000516282 102 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-113P-201ENST00000516653 101 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-928P-201ENST00000516876 104 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 IGKV3-31-201ENST00000523109 329 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 MIR4662B-201ENST00000579498 81 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL589743.1-201ENST00000551932 2712 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-50P-201ENST00000362356 103 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNA5SP383-201ENST00000362934 120 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU4-13P-201ENST00000364019 141 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 MIR488-201ENST00000365739 83 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-573P-201ENST00000383938 106 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 MIR450A2-201ENST00000385022 100 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL133475.1-201ENST00000404414 305 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL513328.1-201ENST00000446460 224 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 HMGN2P21-201ENST00000447764 270 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC010598.1-201ENST00000510378 103 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC108729.3-201ENST00000513484 108 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-1053P-201ENST00000515930 101 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC245166.1-201ENST00000521012 253 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC073308.1-201ENST00000623696 305 ntBASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.97□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6-1210P-201ENST00000363775 107 ntBASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 SNORA51.4-201ENST00000364993 124 ntBASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR181A2-201ENST00000384863 110 ntBASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 CALM2P4-201ENST00000430810 426 ntBASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 HMGN2P9-201ENST00000476875 229 ntBASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR3186-201ENST00000577404 85 ntBASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR2052-201ENST00000636055 55 ntBASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6-655P-201ENST00000362858 107 ntBASIC3.95□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AL139132.1-201ENST00000431587 344 ntBASIC3.95□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNA5SP468-201ENST00000516782 93 ntBASIC3.95□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RPL23AP91-201ENST00000569211 455 ntBASIC3.95□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC091152.3-201ENST00000604227 325 ntBASIC3.95□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 Y_RNA.219-201ENST00000364232 113 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR29B2-201ENST00000385055 81 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AL590004.2-201ENST00000404787 371 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC007064.1-201ENST00000412238 351 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 UQCRHP3-201ENST00000451503 251 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNA5SP20-201ENST00000515976 84 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6-158P-201ENST00000517104 100 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 Y_RNA.818-201ENST00000618813 71 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 ZNF658B-202ENST00000615961 3375 ntBASIC3.94□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC103988.1-201ENST00000566382 2177 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 SNORA63.5-201ENST00000363548 123 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6-1138P-201ENST00000365359 106 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6-805P-201ENST00000365643 106 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR181B1-201ENST00000385240 110 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 SNORD78.1-201ENST00000390866 65 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 SNORA3.2-201ENST00000408221 125 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 SNORD65B-201ENST00000459126 73 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MRPS36P2-201ENST00000512569 299 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC079600.2-201ENST00000550076 130 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 Pinc.1-201ENST00000616452 154 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 1115.2 ms