Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 HMGN2P10-201ENST00000448085 265 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU5F-2P-201ENST00000516066 82 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 ACA59.2-201ENST00000517061 156 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC018630.3-201ENST00000542637 96 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 EIF4A1P12-201ENST00000551910 141 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC105137.2-201ENST00000569073 466 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 MTND5P18-201ENST00000445624 1801 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC017071.1-201ENST00000564407 2204 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-1131P-201ENST00000364955 107 ntBASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNA5SP201-201ENST00000410316 124 ntBASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RN7SL863P-201ENST00000462370 296 ntBASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-762P-201ENST00000517107 102 ntBASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 ELOCP29-201ENST00000588193 334 ntBASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.17□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 MIR148B-201ENST00000362252 99 ntBASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-1107P-201ENST00000364817 104 ntBASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-1275P-201ENST00000391087 107 ntBASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 EDDM3CP-201ENST00000415977 425 ntBASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC108938.1-201ENST00000451204 136 ntBASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AP001318.4-201ENST00000616637 121 ntBASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AL159152.1-201ENST00000635019 2587 ntBASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC091564.4-201ENST00000533934 2194 ntBASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 FAM35BP-202ENST00000497389 3337 ntBASIC4.15□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-756P-201ENST00000383997 107 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 MIR493-201ENST00000385254 89 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 NDUFB4P6-201ENST00000436819 366 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 HMGN2P7-201ENST00000456186 273 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-437P-201ENST00000459408 95 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC090515.1-201ENST00000465295 476 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-1299P-201ENST00000516316 100 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU7-116P-201ENST00000516940 62 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-1231P-201ENST00000517185 103 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC021739.1-201ENST00000559631 174 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 PWAR6-201ENST00000552334 4618 ntBASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 Y_RNA.796-201ENST00000364268 102 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-309P-201ENST00000364573 106 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 Y_RNA.799-201ENST00000364992 102 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-484P-201ENST00000384016 107 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-1323P-201ENST00000384025 107 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SNORA1.3-201ENST00000384676 136 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RN7SL20P-201ENST00000488827 297 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 POLR3GP1-201ENST00000594073 261 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC007318.2-201ENST00000620999 243 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC069528.2-201ENST00000624849 1991 ntBASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AL161431.1-201ENST00000618966 4205 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 Y_RNA.328-201ENST00000365208 113 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SNORA18.2-201ENST00000383865 132 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 MIR124-3-201ENST00000384866 87 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 MIR1302-5-201ENST00000408164 150 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNA5SP239-201ENST00000410218 129 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AL109933.2-201ENST00000452651 260 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SNORA40.13-201ENST00000516379 120 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNA5SP153-201ENST00000516498 76 ntBASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.13□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC009487.2-201ENST00000420969 6821 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC062016.1-201ENST00000355719 319 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-674P-201ENST00000363831 107 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU4-41P-201ENST00000364426 143 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RPS3AP1-201ENST00000413190 320 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 MTATP6P21-201ENST00000440681 189 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 238.8 ms