Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 RNU6-578P-201ENST00000390980 103 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 RNA5SP390-201ENST00000410191 113 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.39□□□□□ -1.87
EPHB3P54753 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.39□□□□□ -1.87
EPHB3P54753 RPL39P29-201ENST00000447779 157 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 RPL26P9-201ENST00000457466 433 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 RPS4XP2-201ENST00000458402 793 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 U8.19-201ENST00000459095 133 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.39□□□□□ -1.87
EPHB3P54753 RPS27P26-201ENST00000494583 239 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.39□□□□□ -1.87
EPHB3P54753 AC107027.2-201ENST00000512197 115 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 RNU6-436P-201ENST00000516171 114 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.39□□□□□ -1.87
EPHB3P54753 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.39□□□□□ -1.87
EPHB3P54753 DNAJC19P2-201ENST00000593340 302 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 MIR6076-201ENST00000617521 113 ntBASIC3.39□□□□□ -1.87
EPHB3P54753 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
EPHB3P54753 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
EPHB3P54753 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.38□□□□□ -1.87
EPHB3P54753 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
EPHB3P54753 RNU6-1280P-201ENST00000365211 107 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 MIR539-201ENST00000365690 78 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
EPHB3P54753 AL353705.1-201ENST00000433468 480 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.38□□□□□ -1.87
EPHB3P54753 SNORA25.12-201ENST00000516202 82 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 SNORA31.16-201ENST00000516773 139 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.38□□□□□ -1.87
EPHB3P54753 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.38□□□□□ -1.87
EPHB3P54753 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.38□□□□□ -1.87
EPHB3P54753 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 AC006380.1-201ENST00000603598 186 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 RNVU1-4-201ENST00000612985 164 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 AC005520.5-201ENST00000613926 164 ntBASIC3.38□□□□□ -1.87
EPHB3P54753 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.38□□□□□ -1.87
EPHB3P54753 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.38□□□□□ -1.87
EPHB3P54753 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
EPHB3P54753 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
EPHB3P54753 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
EPHB3P54753 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
EPHB3P54753 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
EPHB3P54753 RNU6-834P-201ENST00000362367 110 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 Y_RNA.111-201ENST00000363248 100 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 RNU6-801P-201ENST00000364087 105 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 RNU6-1264P-201ENST00000383891 107 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 EI24P2-201ENST00000397776 1076 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 MIR513C-201ENST00000401352 84 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 U3.40-201ENST00000408706 208 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 RNA5SP475-201ENST00000410568 110 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 AC019205.3-201ENST00000424573 156 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 AL135790.2-201ENST00000437701 267 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 HMGN2P10-201ENST00000448085 265 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 AC136628.3-201ENST00000521868 290 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 AC115990.1-201ENST00000526957 301 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 AC022616.8-201ENST00000533569 253 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 CYP4A27P-201ENST00000567218 190 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 MIR2682-201ENST00000580305 110 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 AC069294.1-201ENST00000608397 350 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.37□□□□□ -1.87
EPHB3P54753 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
EPHB3P54753 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.37□□□□□ -1.87
EPHB3P54753 AL021368.2-201ENST00000606125 5352 ntBASIC3.37□□□□□ -1.87
EPHB3P54753 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
EPHB3P54753 snoU2_19.4-201ENST00000364329 80 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 AC002075.2-201ENST00000425207 252 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 AC010154.1-201ENST00000425857 269 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 CST9LP2-201ENST00000437612 320 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 RPL23AP58-201ENST00000440453 469 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 AC090525.1-201ENST00000479116 478 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 AC021269.2-201ENST00000532318 330 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 NACAP3-201ENST00000552100 481 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 AC013791.1-201ENST00000616619 62 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 MIR3658-201ENST00000636291 56 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 AC007256.1-201ENST00000392253 2765 ntBASIC3.36□□□□□ -1.87
EPHB3P54753 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.36□□□□□ -1.87
EPHB3P54753 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
EPHB3P54753 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
EPHB3P54753 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
EPHB3P54753 RNU6-454P-201ENST00000364292 107 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 RNU6-1325P-201ENST00000364905 105 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 SNORA18.3-201ENST00000384122 132 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 SNORA7.4-201ENST00000384249 137 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 MIR626-201ENST00000385032 94 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 MIR549A-201ENST00000385268 96 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 MIR591-201ENST00000385290 95 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 SNORA26.5-201ENST00000391215 123 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 U3.26-201ENST00000391236 204 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 MIR320B2-201ENST00000408479 138 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 RNU6-1077P-201ENST00000410506 102 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 RNA5SP229-201ENST00000410809 99 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.35□□□□□ -1.87
EPHB3P54753 AC008873.1-201ENST00000625051 138 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 SCARNA15.3-201ENST00000626315 122 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 SCARNA4.1-201ENST00000628597 123 ntBASIC3.35□□□□□ -1.87
EPHB3P54753 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
EPHB3P54753 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
EPHB3P54753 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
EPHB3P54753 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 191.8 ms