Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORA43.4-201ENST00000629559 138 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MTND5P32-201ENST00000560711 1802 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MTND5P35-201ENST00000557537 1720 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 SNORD32A-201ENST00000364805 84 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR487A-201ENST00000385009 80 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU6-460P-201ENST00000391158 108 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR1302-4-201ENST00000408701 150 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL356867.1-201ENST00000429623 299 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 U8.19-201ENST00000459095 133 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC092991.1-201ENST00000477176 376 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU6-1256P-201ENST00000516539 103 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNA5SP291-201ENST00000517222 105 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC091544.4-201ENST00000555268 342 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL162713.1-201ENST00000604480 262 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC022149.2-201ENST00000621061 203 ntBASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR422A-201ENST00000362286 90 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 Y_RNA.179-201ENST00000363844 90 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR626-201ENST00000385032 94 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNA5SP31-201ENST00000411144 127 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC009963.1-201ENST00000417265 157 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC007919.1-201ENST00000429380 217 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 GPM6BP3-201ENST00000442797 145 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MTATP6P7-201ENST00000453315 681 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 SNORD105B-201ENST00000458770 79 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR3921-201ENST00000577308 85 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC006380.1-201ENST00000603598 186 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 U6.99-201ENST00000637524 83 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AF127577.6-201ENST00000623352 2191 ntBASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU4-82P-201ENST00000362443 140 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 snoU2_19.4-201ENST00000364329 80 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 Y_RNA.329-201ENST00000365209 107 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 SNORD17-201ENST00000390930 237 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNA5SP508-201ENST00000411327 119 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL603825.1-201ENST00000438481 80 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNA5SP445-201ENST00000515889 115 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC013791.1-201ENST00000616619 62 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR6844-201ENST00000637122 62 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC099654.7-201ENST00000635788 2127 ntBASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU6-1180P-201ENST00000364935 107 ntBASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 Y_RNA.525-201ENST00000384570 113 ntBASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC016632.1-201ENST00000503994 196 ntBASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MLLT10P2-201ENST00000506434 249 ntBASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU6-1007P-201ENST00000516586 107 ntBASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR3162-201ENST00000581818 82 ntBASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 U6.95-201ENST00000636931 70 ntBASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.6□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU6-407P-201ENST00000365280 104 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU6-643P-201ENST00000384018 107 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL512633.1-201ENST00000399931 655 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR1290-201ENST00000408735 78 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RPL21P66-201ENST00000426566 466 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC107083.1-201ENST00000439643 279 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC136628.3-201ENST00000521868 290 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC134026.1-201ENST00000623249 2239 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR3674-201ENST00000636576 68 ntBASIC4.59□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.59□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 233.1 ms