Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RPL23AP49-201ENST00000492925 468 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC006254.2-201ENST00000603259 279 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU1-30P-201ENST00000606575 163 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MIR7106-201ENST00000612419 65 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC092593.1-201ENST00000515413 1815 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-1286P-201ENST00000383871 107 ntBASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-376P-201ENST00000384731 106 ntBASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MIR887-201ENST00000401258 79 ntBASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 EIF1AXP1-201ENST00000419267 435 ntBASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC010265.1-201ENST00000513509 211 ntBASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC020914.4-201ENST00000597690 277 ntBASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC004825.2-201ENST00000616634 455 ntBASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC110491.1-201ENST00000562191 2010 ntBASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.87□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL133383.2-201ENST00000622958 2336 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC003685.2-201ENST00000422795 395 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RPL23AP58-201ENST00000440453 469 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RN7SL93P-201ENST00000463035 293 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC084357.1-201ENST00000473404 255 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 Y_RNA.797-201ENST00000515977 94 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-191P-201ENST00000516295 94 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL391261.3-201ENST00000557194 520 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MIR4276-201ENST00000584832 70 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 DNAJC19P2-201ENST00000593340 302 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC022441.3-201ENST00000605737 136 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL162274.2-201ENST00000614406 332 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 BMS1P21-201ENST00000634565 365 ntBASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.86□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 PHKBP1-201ENST00000450951 1951 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC007390.2-201ENST00000606229 3803 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 Y_RNA.563-201ENST00000384707 108 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNY4P18-201ENST00000391107 89 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RPS20P10-201ENST00000451209 253 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNA5SP165-201ENST00000517142 115 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MIR4782-201ENST00000577987 79 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MIR5695-201ENST00000579717 85 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MIR4431-201ENST00000579990 94 ntBASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL049781.1-201ENST00000623195 3585 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL391516.1-201ENST00000554380 2449 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL450326.2-201ENST00000421913 1962 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-1272P-201ENST00000362776 107 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-899P-201ENST00000363947 107 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 SNORA20-201ENST00000384662 132 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MIR10B-201ENST00000385011 110 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNA5SP424-201ENST00000390988 115 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-1064P-201ENST00000410626 104 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-1001P-201ENST00000411265 100 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 BTF3P11-201ENST00000426582 477 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL357134.1-201ENST00000445848 426 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL133162.1-201ENST00000463228 453 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 HSPE1P6-201ENST00000479457 291 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC107027.2-201ENST00000512197 115 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC093908.1-201ENST00000623125 8092 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms