Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AL391219.1-201ENST00000422570 483 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 AC034236.1-201ENST00000469891 373 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 RPS26P28-201ENST00000470806 348 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC4.14□□□□□ -1.75
EPHB3P54753 MTND3P25-201ENST00000509243 135 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 RNA5SP143-201ENST00000516936 115 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 RNU6-1212P-201ENST00000517023 104 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 AL121772.2-201ENST00000614331 297 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 AC127459.3-201ENST00000624328 466 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 MIR4275-201ENST00000636486 87 ntBASIC4.14□□□□□ -1.75
EPHB3P54753 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
EPHB3P54753 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
EPHB3P54753 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
EPHB3P54753 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.14□□□□□ -1.75
EPHB3P54753 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
EPHB3P54753 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
EPHB3P54753 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
EPHB3P54753 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
EPHB3P54753 RNU6-288P-201ENST00000363690 104 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 Y_RNA.237-201ENST00000364439 102 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 SNORD113-1-201ENST00000365321 69 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 U8.8-201ENST00000365399 135 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 MIR578-201ENST00000384828 96 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 MIR628-201ENST00000385229 95 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 RNA5SP56-201ENST00000410277 118 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AL139156.1-201ENST00000412785 841 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 CYCSP33-201ENST00000414485 327 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.13□□□□□ -1.75
EPHB3P54753 PPP1R11P2-201ENST00000423543 382 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AC096920.1-201ENST00000423991 241 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AL451062.2-201ENST00000427515 271 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AC006946.1-201ENST00000429106 328 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AC090774.1-201ENST00000435925 246 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AL138752.1-201ENST00000452964 351 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AC010469.1-201ENST00000463864 576 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
EPHB3P54753 RPS23P5-201ENST00000495419 428 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AC090281.1-201ENST00000523019 276 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.13□□□□□ -1.75
EPHB3P54753 AC126177.3-201ENST00000551839 688 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 TRAV32-201ENST00000553993 340 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 AC022968.1-201ENST00000567372 442 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 CYP4A43P-201ENST00000568156 121 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.13□□□□□ -1.75
EPHB3P54753 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.13□□□□□ -1.75
EPHB3P54753 AC012442.3-202ENST00000636742 206 ntBASIC4.13□□□□□ -1.75
EPHB3P54753 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.13□□□□□ -1.75
EPHB3P54753 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.13□□□□□ -1.75
EPHB3P54753 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
EPHB3P54753 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.13□□□□□ -1.75
EPHB3P54753 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
EPHB3P54753 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.13□□□□□ -1.75
EPHB3P54753 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.12□□□□□ -1.75
EPHB3P54753 AC068254.2-201ENST00000623938 3577 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
EPHB3P54753 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
EPHB3P54753 ZNF299P-201ENST00000406845 1804 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
EPHB3P54753 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
EPHB3P54753 RNU6-1155P-201ENST00000363554 107 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 RNU6-187P-201ENST00000384139 106 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 SNORA69.1-201ENST00000390904 137 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 RPL23AP48-201ENST00000406913 488 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 SNORA3C-201ENST00000408792 125 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 Y_RNA.592-201ENST00000410274 109 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 BX842559.1-201ENST00000419615 532 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 AC007098.1-201ENST00000420122 367 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
EPHB3P54753 ELOCP18-201ENST00000434209 337 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 AC004866.2-201ENST00000438285 481 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.12□□□□□ -1.75
EPHB3P54753 AC098869.1-201ENST00000481627 292 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 PPBPP1-201ENST00000510807 373 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 VWA8P1-201ENST00000510889 176 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 RNU6-914P-201ENST00000516749 109 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 Y_RNA.703-201ENST00000516846 111 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 SNRPGP16-201ENST00000533275 226 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.12□□□□□ -1.75
EPHB3P54753 OR4H12P-201ENST00000556269 907 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.12□□□□□ -1.75
EPHB3P54753 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.12□□□□□ -1.75
EPHB3P54753 AC008739.3-201ENST00000603262 127 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 AC008962.1-201ENST00000605729 304 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 AL450472.3-201ENST00000615578 367 ntBASIC4.12□□□□□ -1.75
EPHB3P54753 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.12□□□□□ -1.75
EPHB3P54753 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
EPHB3P54753 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
EPHB3P54753 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
EPHB3P54753 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
EPHB3P54753 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
EPHB3P54753 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
EPHB3P54753 AP000560.1-201ENST00000624150 1937 ntBASIC4.11□□□□□ -1.75
EPHB3P54753 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.11□□□□□ -1.75
EPHB3P54753 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
EPHB3P54753 AL391987.6-201ENST00000305671 199 ntBASIC4.11□□□□□ -1.75
EPHB3P54753 RNU6-933P-201ENST00000384424 107 ntBASIC4.11□□□□□ -1.75
EPHB3P54753 Y_RNA.533-201ENST00000384596 114 ntBASIC4.11□□□□□ -1.75
EPHB3P54753 Y_RNA.534-201ENST00000384599 112 ntBASIC4.11□□□□□ -1.75
EPHB3P54753 AL513475.1-201ENST00000406602 315 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 186.8 ms