Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smco4Q9JIS3 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smco4Q9JIS3 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smco4Q9JIS3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smco4Q9JIS3 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smco4Q9JIS3 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smco4Q9JIS3 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smco4Q9JIS3 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smco4Q9JIS3 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC18.76■□□□□ 0.59
Smco4Q9JIS3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.76■□□□□ 0.59
Smco4Q9JIS3 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Smco4Q9JIS3 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smco4Q9JIS3 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smco4Q9JIS3 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smco4Q9JIS3 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smco4Q9JIS3 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smco4Q9JIS3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smco4Q9JIS3 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smco4Q9JIS3 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Smco4Q9JIS3 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Smco4Q9JIS3 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smco4Q9JIS3 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smco4Q9JIS3 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smco4Q9JIS3 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smco4Q9JIS3 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Smco4Q9JIS3 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smco4Q9JIS3 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Smco4Q9JIS3 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smco4Q9JIS3 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smco4Q9JIS3 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smco4Q9JIS3 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smco4Q9JIS3 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smco4Q9JIS3 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Smco4Q9JIS3 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Smco4Q9JIS3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18.69■□□□□ 0.58
Smco4Q9JIS3 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smco4Q9JIS3 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Smco4Q9JIS3 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smco4Q9JIS3 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smco4Q9JIS3 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smco4Q9JIS3 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.67■□□□□ 0.58
Smco4Q9JIS3 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Smco4Q9JIS3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smco4Q9JIS3 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smco4Q9JIS3 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smco4Q9JIS3 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Smco4Q9JIS3 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Smco4Q9JIS3 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Smco4Q9JIS3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smco4Q9JIS3 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smco4Q9JIS3 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smco4Q9JIS3 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Smco4Q9JIS3 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smco4Q9JIS3 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Smco4Q9JIS3 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smco4Q9JIS3 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smco4Q9JIS3 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smco4Q9JIS3 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Smco4Q9JIS3 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smco4Q9JIS3 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC18.64■□□□□ 0.57
Smco4Q9JIS3 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smco4Q9JIS3 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smco4Q9JIS3 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Smco4Q9JIS3 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Smco4Q9JIS3 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smco4Q9JIS3 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.63■□□□□ 0.57
Smco4Q9JIS3 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smco4Q9JIS3 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smco4Q9JIS3 Notumos-201ENSMUST00000151998 2659 ntBASIC18.63■□□□□ 0.57
Smco4Q9JIS3 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smco4Q9JIS3 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smco4Q9JIS3 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smco4Q9JIS3 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smco4Q9JIS3 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Smco4Q9JIS3 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Smco4Q9JIS3 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smco4Q9JIS3 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smco4Q9JIS3 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smco4Q9JIS3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC18.61■□□□□ 0.57
Smco4Q9JIS3 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smco4Q9JIS3 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Smco4Q9JIS3 Gm30346-201ENSMUST00000218641 1699 ntBASIC18.6■□□□□ 0.57
Smco4Q9JIS3 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smco4Q9JIS3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18.59■□□□□ 0.57
Smco4Q9JIS3 Gm25238-201ENSMUST00000174914 89 ntBASIC18.59■□□□□ 0.57
Smco4Q9JIS3 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smco4Q9JIS3 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Smco4Q9JIS3 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Smco4Q9JIS3 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Smco4Q9JIS3 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Smco4Q9JIS3 AL845457.1-201ENSMUST00000197244 68 ntBASIC18.58■□□□□ 0.56
Smco4Q9JIS3 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.58■□□□□ 0.56
Smco4Q9JIS3 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Smco4Q9JIS3 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Smco4Q9JIS3 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smco4Q9JIS3 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smco4Q9JIS3 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Smco4Q9JIS3 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smco4Q9JIS3 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smco4Q9JIS3 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms