Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col6a6Q8C6K9 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col6a6Q8C6K9 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.41■■□□□ 1.02
Col6a6Q8C6K9 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col6a6Q8C6K9 Gm5921-201ENSMUST00000075898 882 ntBASIC21.4■■□□□ 1.02
Col6a6Q8C6K9 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col6a6Q8C6K9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Col6a6Q8C6K9 Gm22567-201ENSMUST00000175542 342 ntBASIC21.4■■□□□ 1.02
Col6a6Q8C6K9 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col6a6Q8C6K9 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
Col6a6Q8C6K9 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col6a6Q8C6K9 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col6a6Q8C6K9 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.39■■□□□ 1.01
Col6a6Q8C6K9 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col6a6Q8C6K9 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Col6a6Q8C6K9 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col6a6Q8C6K9 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21.37■■□□□ 1.01
Col6a6Q8C6K9 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.37■■□□□ 1.01
Col6a6Q8C6K9 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a6Q8C6K9 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.35■■□□□ 1.01
Col6a6Q8C6K9 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col6a6Q8C6K9 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC21.35■■□□□ 1.01
Col6a6Q8C6K9 AC151971.4-201ENSMUST00000214717 704 ntBASIC21.34■■□□□ 1.01
Col6a6Q8C6K9 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col6a6Q8C6K9 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col6a6Q8C6K9 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.33■■□□□ 1.01
Col6a6Q8C6K9 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC21.33■■□□□ 1.01
Col6a6Q8C6K9 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col6a6Q8C6K9 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col6a6Q8C6K9 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Col6a6Q8C6K9 Gm15546-201ENSMUST00000122095 826 ntBASIC21.31■■□□□ 1
Col6a6Q8C6K9 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col6a6Q8C6K9 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col6a6Q8C6K9 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col6a6Q8C6K9 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col6a6Q8C6K9 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Col6a6Q8C6K9 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col6a6Q8C6K9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.3■■□□□ 1
Col6a6Q8C6K9 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col6a6Q8C6K9 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Col6a6Q8C6K9 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col6a6Q8C6K9 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col6a6Q8C6K9 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col6a6Q8C6K9 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col6a6Q8C6K9 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.27■■□□□ 1
Col6a6Q8C6K9 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.27■■□□□ 1
Col6a6Q8C6K9 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col6a6Q8C6K9 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col6a6Q8C6K9 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a6Q8C6K9 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a6Q8C6K9 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a6Q8C6K9 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC21.25■□□□□ 0.99
Col6a6Q8C6K9 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21.25■□□□□ 0.99
Col6a6Q8C6K9 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a6Q8C6K9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a6Q8C6K9 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a6Q8C6K9 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Col6a6Q8C6K9 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a6Q8C6K9 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col6a6Q8C6K9 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col6a6Q8C6K9 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col6a6Q8C6K9 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col6a6Q8C6K9 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col6a6Q8C6K9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col6a6Q8C6K9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col6a6Q8C6K9 Gm9812-201ENSMUST00000061934 968 ntBASIC21.22■□□□□ 0.99
Col6a6Q8C6K9 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a6Q8C6K9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a6Q8C6K9 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.21■□□□□ 0.99
Col6a6Q8C6K9 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Col6a6Q8C6K9 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Col6a6Q8C6K9 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a6Q8C6K9 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a6Q8C6K9 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a6Q8C6K9 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
Col6a6Q8C6K9 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a6Q8C6K9 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a6Q8C6K9 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col6a6Q8C6K9 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Col6a6Q8C6K9 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.19■□□□□ 0.98
Col6a6Q8C6K9 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.18■□□□□ 0.98
Col6a6Q8C6K9 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col6a6Q8C6K9 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col6a6Q8C6K9 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a6Q8C6K9 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a6Q8C6K9 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a6Q8C6K9 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a6Q8C6K9 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a6Q8C6K9 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col6a6Q8C6K9 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Col6a6Q8C6K9 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Col6a6Q8C6K9 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 8.9 ms