Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Cln3Q61124 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Cln3Q61124 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Cln3Q61124 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
Cln3Q61124 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Cln3Q61124 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Cln3Q61124 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC26.19■■□□□ 1.78
Cln3Q61124 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Cln3Q61124 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC26.19■■□□□ 1.78
Cln3Q61124 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Cln3Q61124 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Cln3Q61124 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
Cln3Q61124 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
Cln3Q61124 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Cln3Q61124 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Cln3Q61124 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC26.17■■□□□ 1.78
Cln3Q61124 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Cln3Q61124 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Cln3Q61124 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
Cln3Q61124 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Cln3Q61124 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Cln3Q61124 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Cln3Q61124 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Cln3Q61124 Gm7332-201ENSMUST00000118351 454 ntBASIC26.14■■□□□ 1.78
Cln3Q61124 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Cln3Q61124 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Cln3Q61124 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC26.13■■□□□ 1.77
Cln3Q61124 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC26.13■■□□□ 1.77
Cln3Q61124 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC26.12■■□□□ 1.77
Cln3Q61124 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Cln3Q61124 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Cln3Q61124 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Cln3Q61124 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Cln3Q61124 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Cln3Q61124 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC26.12■■□□□ 1.77
Cln3Q61124 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cln3Q61124 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC26.11■■□□□ 1.77
Cln3Q61124 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cln3Q61124 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Cln3Q61124 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cln3Q61124 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cln3Q61124 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cln3Q61124 AC151971.4-201ENSMUST00000214717 704 ntBASIC26.1■■□□□ 1.77
Cln3Q61124 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cln3Q61124 Gm9910-201ENSMUST00000195385 1550 ntBASIC26.09■■□□□ 1.77
Cln3Q61124 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Cln3Q61124 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Cln3Q61124 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC26.08■■□□□ 1.77
Cln3Q61124 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
Cln3Q61124 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cln3Q61124 Gm9812-201ENSMUST00000061934 968 ntBASIC26.07■■□□□ 1.76
Cln3Q61124 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cln3Q61124 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Cln3Q61124 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Cln3Q61124 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC26.06■■□□□ 1.76
Cln3Q61124 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Cln3Q61124 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Cln3Q61124 Gm14523-201ENSMUST00000117260 558 ntBASIC26.05■■□□□ 1.76
Cln3Q61124 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC26.05■■□□□ 1.76
Cln3Q61124 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Cln3Q61124 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC26.04■■□□□ 1.76
Cln3Q61124 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC26.04■■□□□ 1.76
Cln3Q61124 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.04■■□□□ 1.76
Cln3Q61124 AC122317.2-201ENSMUST00000218708 1248 ntBASIC26.04■■□□□ 1.76
Cln3Q61124 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Cln3Q61124 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Cln3Q61124 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Cln3Q61124 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Cln3Q61124 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cln3Q61124 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cln3Q61124 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cln3Q61124 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cln3Q61124 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC26■■□□□ 1.75
Cln3Q61124 Gm6206-201ENSMUST00000133472 2199 ntBASIC25.99■■□□□ 1.75
Cln3Q61124 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
Cln3Q61124 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Cln3Q61124 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Cln3Q61124 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
Cln3Q61124 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cln3Q61124 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cln3Q61124 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC25.96■■□□□ 1.75
Cln3Q61124 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cln3Q61124 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cln3Q61124 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC25.95■■□□□ 1.74
Cln3Q61124 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Cln3Q61124 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
Cln3Q61124 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Cln3Q61124 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC25.95■■□□□ 1.74
Cln3Q61124 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC25.94■■□□□ 1.74
Cln3Q61124 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Cln3Q61124 Gm14121-201ENSMUST00000121441 1380 ntBASIC25.93■■□□□ 1.74
Cln3Q61124 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC25.92■■□□□ 1.74
Cln3Q61124 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Cln3Q61124 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Cln3Q61124 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Cln3Q61124 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Cln3Q61124 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Cln3Q61124 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Cln3Q61124 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
Cln3Q61124 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC25.89■■□□□ 1.74
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms