Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC016252.1-201ENST00000609721 474 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 ADAM3A-203ENST00000461344 2157 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 HSPD1P16-201ENST00000402302 394 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 OR51A3P-201ENST00000413596 924 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 RPL32P35-201ENST00000415214 394 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 RPL29P29-201ENST00000448725 423 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AC025811.1-201ENST00000604312 472 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AL138827.1-201ENST00000402666 306 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 RNU2-22P-201ENST00000411266 212 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 RPS7P13-201ENST00000413955 498 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 RPS26P40-201ENST00000435209 294 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AC146507.2-201ENST00000460608 476 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 ST13P14-201ENST00000474095 734 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 SERPINE4P-201ENST00000554978 281 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 MIR4644-201ENST00000579929 84 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AC110741.2-201ENST00000605278 268 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 AC091564.4-201ENST00000533934 2194 ntBASIC3.67□□□□□ -1.82
SHANK3Q9BYB0 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 SNORA46-201ENST00000384762 135 ntBASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 AL512430.2-201ENST00000406786 339 ntBASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 RN7SKP58-201ENST00000411010 305 ntBASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 GTF2IP23-201ENST00000423746 351 ntBASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 MTCO1P52-201ENST00000433928 531 ntBASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 AC006111.3-201ENST00000622137 383 ntBASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SHANK3Q9BYB0 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 RN7SKP223-201ENST00000410582 62 ntBASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 RPS12P23-201ENST00000419579 400 ntBASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 PPIAP17-201ENST00000438507 471 ntBASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 AC008126.1-201ENST00000549019 480 ntBASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 AL392112.1-201ENST00000605115 829 ntBASIC3.65□□□□□ -1.82
SHANK3Q9BYB0 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC3.65□□□□□ -1.83
SHANK3Q9BYB0 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 RNU1-75P-201ENST00000347264 129 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 Y_RNA.269-201ENST00000364685 89 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 MIR592-201ENST00000384959 97 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 AC017007.3-201ENST00000479865 435 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 AADACP1-206ENST00000561502 1193 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 RPL23AP4-201ENST00000427757 463 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 MTND6P18-201ENST00000439477 513 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 CKS1BP2-201ENST00000497342 240 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 AC005351.1-201ENST00000511152 786 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 AC006840.1-201ENST00000623069 542 ntBASIC3.64□□□□□ -1.83
SHANK3Q9BYB0 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms