Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Smco4Q9JIS3 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Smco4Q9JIS3 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Smco4Q9JIS3 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Smco4Q9JIS3 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Smco4Q9JIS3 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Gm37305-201ENSMUST00000195714 4279 ntBASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Smco4Q9JIS3 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 AC163637.1-201ENSMUST00000215491 1894 ntBASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Gm22238-201ENSMUST00000175222 88 ntBASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Gm15820-201ENSMUST00000201566 728 ntBASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smco4Q9JIS3 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smco4Q9JIS3 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC13.27□□□□□ -0.29
Smco4Q9JIS3 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Gm7160-202ENSMUST00000188519 1027 ntBASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 AC115863.1-201ENSMUST00000214815 1813 ntBASIC13.26□□□□□ -0.29
Smco4Q9JIS3 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Smco4Q9JIS3 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms