Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
Chd4Q6PDQ2 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Chd4Q6PDQ2 Cap2-205ENSMUST00000225824 1634 ntBASIC31.94■■■□□ 2.7
Chd4Q6PDQ2 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Chd4Q6PDQ2 Gm45364-201ENSMUST00000210883 159 ntBASIC31.94■■■□□ 2.7
Chd4Q6PDQ2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC31.93■■■□□ 2.7
Chd4Q6PDQ2 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
Chd4Q6PDQ2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
Chd4Q6PDQ2 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Chd4Q6PDQ2 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
Chd4Q6PDQ2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Chd4Q6PDQ2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
Chd4Q6PDQ2 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC31.89■■■□□ 2.7
Chd4Q6PDQ2 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC31.88■■■□□ 2.69
Chd4Q6PDQ2 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC31.88■■■□□ 2.69
Chd4Q6PDQ2 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC31.88■■■□□ 2.69
Chd4Q6PDQ2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC31.87■■■□□ 2.69
Chd4Q6PDQ2 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC31.86■■■□□ 2.69
Chd4Q6PDQ2 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Chd4Q6PDQ2 Gm9905-201ENSMUST00000065740 1845 ntBASIC31.85■■■□□ 2.69
Chd4Q6PDQ2 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
Chd4Q6PDQ2 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Chd4Q6PDQ2 Gm37136-201ENSMUST00000194368 194 ntBASIC31.83■■■□□ 2.69
Chd4Q6PDQ2 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC31.83■■■□□ 2.69
Chd4Q6PDQ2 Pkd1-207ENSMUST00000228550 1050 ntBASIC31.82■■■□□ 2.68
Chd4Q6PDQ2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Chd4Q6PDQ2 Gm43445-201ENSMUST00000198564 2091 ntBASIC31.8■■■□□ 2.68
Chd4Q6PDQ2 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Chd4Q6PDQ2 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Chd4Q6PDQ2 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Chd4Q6PDQ2 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Chd4Q6PDQ2 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC31.79■■■□□ 2.68
Chd4Q6PDQ2 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Chd4Q6PDQ2 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
Chd4Q6PDQ2 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC31.78■■■□□ 2.68
Chd4Q6PDQ2 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
Chd4Q6PDQ2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC31.76■■■□□ 2.68
Chd4Q6PDQ2 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
Chd4Q6PDQ2 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
Chd4Q6PDQ2 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC31.75■■■□□ 2.67
Chd4Q6PDQ2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
Chd4Q6PDQ2 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Chd4Q6PDQ2 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Chd4Q6PDQ2 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Chd4Q6PDQ2 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Chd4Q6PDQ2 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
Chd4Q6PDQ2 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC31.7■■■□□ 2.67
Chd4Q6PDQ2 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Chd4Q6PDQ2 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Chd4Q6PDQ2 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Chd4Q6PDQ2 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Chd4Q6PDQ2 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Chd4Q6PDQ2 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
Chd4Q6PDQ2 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
Chd4Q6PDQ2 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Chd4Q6PDQ2 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Chd4Q6PDQ2 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC31.66■■■□□ 2.66
Chd4Q6PDQ2 Mir3960-201ENSMUST00000198213 73 ntBASIC31.65■■■□□ 2.66
Chd4Q6PDQ2 Scarna2-201ENSMUST00000157560 414 ntBASIC31.65■■■□□ 2.66
Chd4Q6PDQ2 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Chd4Q6PDQ2 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
Chd4Q6PDQ2 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC31.64■■■□□ 2.65
Chd4Q6PDQ2 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC31.63■■■□□ 2.65
Chd4Q6PDQ2 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC31.61■■■□□ 2.65
Chd4Q6PDQ2 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC31.61■■■□□ 2.65
Chd4Q6PDQ2 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Chd4Q6PDQ2 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC31.6■■■□□ 2.65
Chd4Q6PDQ2 Gm9806-201ENSMUST00000051080 552 ntBASIC31.6■■■□□ 2.65
Chd4Q6PDQ2 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
Chd4Q6PDQ2 Gm11687-201ENSMUST00000118911 886 ntBASIC31.59■■■□□ 2.65
Chd4Q6PDQ2 AC154454.1-201ENSMUST00000225253 216 ntBASIC31.59■■■□□ 2.65
Chd4Q6PDQ2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Chd4Q6PDQ2 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Chd4Q6PDQ2 Gm4799-201ENSMUST00000095396 657 ntBASIC31.58■■■□□ 2.65
Chd4Q6PDQ2 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Gm12366-201ENSMUST00000121722 873 ntBASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Gm5786-201ENSMUST00000085368 882 ntBASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Gm6206-201ENSMUST00000133472 2199 ntBASIC31.57■■■□□ 2.64
Chd4Q6PDQ2 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Chd4Q6PDQ2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Chd4Q6PDQ2 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Chd4Q6PDQ2 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
Chd4Q6PDQ2 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Chd4Q6PDQ2 Gm16437-201ENSMUST00000025669 507 ntBASIC31.55■■■□□ 2.64
Chd4Q6PDQ2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC31.53■■■□□ 2.64
Chd4Q6PDQ2 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Chd4Q6PDQ2 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC31.51■■■□□ 2.64
Chd4Q6PDQ2 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
Chd4Q6PDQ2 AC122317.2-201ENSMUST00000218708 1248 ntBASIC31.51■■■□□ 2.64
Chd4Q6PDQ2 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Chd4Q6PDQ2 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Chd4Q6PDQ2 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Chd4Q6PDQ2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC31.5■■■□□ 2.63
Chd4Q6PDQ2 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
Chd4Q6PDQ2 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms