Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Col11a1Q61245 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Col11a1Q61245 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC27.68■■■□□ 2.02
Col11a1Q61245 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Col11a1Q61245 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC27.66■■■□□ 2.02
Col11a1Q61245 AC154454.1-201ENSMUST00000225253 216 ntBASIC27.66■■■□□ 2.02
Col11a1Q61245 Mir3960-201ENSMUST00000198213 73 ntBASIC27.65■■■□□ 2.02
Col11a1Q61245 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Col11a1Q61245 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Col11a1Q61245 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
Col11a1Q61245 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
Col11a1Q61245 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Col11a1Q61245 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC27.62■■■□□ 2.01
Col11a1Q61245 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Col11a1Q61245 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Col11a1Q61245 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC27.58■■■□□ 2.01
Col11a1Q61245 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC27.57■■■□□ 2
Col11a1Q61245 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Col11a1Q61245 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Col11a1Q61245 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC27.56■■■□□ 2
Col11a1Q61245 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Col11a1Q61245 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC27.55■■■□□ 2
Col11a1Q61245 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC27.55■■■□□ 2
Col11a1Q61245 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC27.55■■■□□ 2
Col11a1Q61245 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Col11a1Q61245 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC27.54■■■□□ 2
Col11a1Q61245 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Col11a1Q61245 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC27.54■■■□□ 2
Col11a1Q61245 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Col11a1Q61245 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC27.53■■■□□ 2
Col11a1Q61245 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC27.53■■■□□ 2
Col11a1Q61245 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC27.52■■■□□ 2
Col11a1Q61245 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Col11a1Q61245 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Col11a1Q61245 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC27.51■■□□□ 1.99
Col11a1Q61245 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
Col11a1Q61245 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Col11a1Q61245 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Col11a1Q61245 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC27.5■■□□□ 1.99
Col11a1Q61245 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
Col11a1Q61245 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Col11a1Q61245 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Col11a1Q61245 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Col11a1Q61245 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC27.48■■□□□ 1.99
Col11a1Q61245 Gm37136-201ENSMUST00000194368 194 ntBASIC27.48■■□□□ 1.99
Col11a1Q61245 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Col11a1Q61245 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Col11a1Q61245 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC27.47■■□□□ 1.99
Col11a1Q61245 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Col11a1Q61245 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC27.46■■□□□ 1.99
Col11a1Q61245 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
Col11a1Q61245 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Col11a1Q61245 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
Col11a1Q61245 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC27.45■■□□□ 1.99
Col11a1Q61245 AC151971.4-201ENSMUST00000214717 704 ntBASIC27.45■■□□□ 1.98
Col11a1Q61245 Gm14523-201ENSMUST00000117260 558 ntBASIC27.43■■□□□ 1.98
Col11a1Q61245 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Col11a1Q61245 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC27.42■■□□□ 1.98
Col11a1Q61245 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC27.42■■□□□ 1.98
Col11a1Q61245 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Col11a1Q61245 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Col11a1Q61245 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Col11a1Q61245 Gm22567-201ENSMUST00000175542 342 ntBASIC27.41■■□□□ 1.98
Col11a1Q61245 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
Col11a1Q61245 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Col11a1Q61245 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
Col11a1Q61245 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Col11a1Q61245 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Col11a1Q61245 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC27.39■■□□□ 1.97
Col11a1Q61245 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC27.38■■□□□ 1.97
Col11a1Q61245 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Col11a1Q61245 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Col11a1Q61245 Gm5812-201ENSMUST00000061073 957 ntBASIC27.38■■□□□ 1.97
Col11a1Q61245 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Col11a1Q61245 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
Col11a1Q61245 Gm12818-201ENSMUST00000117562 1349 ntBASIC27.36■■□□□ 1.97
Col11a1Q61245 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
Col11a1Q61245 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC27.35■■□□□ 1.97
Col11a1Q61245 AC122317.2-201ENSMUST00000218708 1248 ntBASIC27.34■■□□□ 1.97
Col11a1Q61245 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Col11a1Q61245 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC27.34■■□□□ 1.97
Col11a1Q61245 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Col11a1Q61245 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Col11a1Q61245 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC27.33■■□□□ 1.97
Col11a1Q61245 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC27.33■■□□□ 1.97
Col11a1Q61245 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
Col11a1Q61245 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
Col11a1Q61245 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.96
Col11a1Q61245 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Col11a1Q61245 Gm9910-201ENSMUST00000195385 1550 ntBASIC27.31■■□□□ 1.96
Col11a1Q61245 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Col11a1Q61245 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Col11a1Q61245 Gm9905-201ENSMUST00000065740 1845 ntBASIC27.3■■□□□ 1.96
Col11a1Q61245 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Col11a1Q61245 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Col11a1Q61245 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Col11a1Q61245 Gm10420-201ENSMUST00000121713 882 ntBASIC27.3■■□□□ 1.96
Col11a1Q61245 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
Col11a1Q61245 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Col11a1Q61245 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms