Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Pcdha4O88689 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Pcdha4O88689 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Pcdha4O88689 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Pcdha4O88689 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.55■■□□□ 1.84
Pcdha4O88689 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Pcdha4O88689 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Pcdha4O88689 Gm7432-201ENSMUST00000210343 879 ntBASIC26.54■■□□□ 1.84
Pcdha4O88689 Particl-201ENSMUST00000205370 1560 ntBASIC26.54■■□□□ 1.84
Pcdha4O88689 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Pcdha4O88689 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Pcdha4O88689 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Pcdha4O88689 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Pcdha4O88689 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Pcdha4O88689 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Pcdha4O88689 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.52■■□□□ 1.84
Pcdha4O88689 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.84
Pcdha4O88689 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC26.5■■□□□ 1.83
Pcdha4O88689 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
Pcdha4O88689 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Pcdha4O88689 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Pcdha4O88689 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC26.45■■□□□ 1.82
Pcdha4O88689 AC131739.1-201ENSMUST00000221692 1245 ntBASIC26.45■■□□□ 1.82
Pcdha4O88689 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Pcdha4O88689 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.44■■□□□ 1.82
Pcdha4O88689 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Pcdha4O88689 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
Pcdha4O88689 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Pcdha4O88689 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Pcdha4O88689 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
Pcdha4O88689 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC26.41■■□□□ 1.82
Pcdha4O88689 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Pcdha4O88689 Gm11599-201ENSMUST00000118720 878 ntBASIC26.4■■□□□ 1.82
Pcdha4O88689 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
Pcdha4O88689 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC26.39■■□□□ 1.82
Pcdha4O88689 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.39■■□□□ 1.82
Pcdha4O88689 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
Pcdha4O88689 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Pcdha4O88689 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Pcdha4O88689 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Pcdha4O88689 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC26.38■■□□□ 1.81
Pcdha4O88689 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Pcdha4O88689 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Pcdha4O88689 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Pcdha4O88689 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Pcdha4O88689 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
Pcdha4O88689 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Pcdha4O88689 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Pcdha4O88689 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC26.35■■□□□ 1.81
Pcdha4O88689 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.35■■□□□ 1.81
Pcdha4O88689 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.35■■□□□ 1.81
Pcdha4O88689 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdha4O88689 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdha4O88689 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdha4O88689 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdha4O88689 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdha4O88689 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdha4O88689 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Pcdha4O88689 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Pcdha4O88689 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Pcdha4O88689 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Pcdha4O88689 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Pcdha4O88689 Gm37136-201ENSMUST00000194368 194 ntBASIC26.32■■□□□ 1.8
Pcdha4O88689 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
Pcdha4O88689 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Pcdha4O88689 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Pcdha4O88689 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Pcdha4O88689 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
Pcdha4O88689 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Pcdha4O88689 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Pcdha4O88689 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Pcdha4O88689 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Pcdha4O88689 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC26.28■■□□□ 1.8
Pcdha4O88689 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Pcdha4O88689 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Pcdha4O88689 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Pcdha4O88689 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Pcdha4O88689 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
Pcdha4O88689 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Pcdha4O88689 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Pcdha4O88689 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Pcdha4O88689 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Pcdha4O88689 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Pcdha4O88689 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.25■■□□□ 1.79
Pcdha4O88689 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Pcdha4O88689 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Pcdha4O88689 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Pcdha4O88689 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Pcdha4O88689 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Pcdha4O88689 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Pcdha4O88689 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Pcdha4O88689 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Pcdha4O88689 Gm14121-201ENSMUST00000121441 1380 ntBASIC26.18■■□□□ 1.78
Pcdha4O88689 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Pcdha4O88689 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
Pcdha4O88689 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Pcdha4O88689 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Pcdha4O88689 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
Pcdha4O88689 Gm5987-201ENSMUST00000196433 1151 ntBASIC26.14■■□□□ 1.78
Pcdha4O88689 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 149.2 ms