Protein–RNA interactions for Protein: O70400

Pdlim1, PDZ and LIM domain protein 1, mousemouse

Predictions only

Length 327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim1O70400 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Pdlim1O70400 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Pdlim1O70400 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Pdlim1O70400 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC23.41■■□□□ 1.34
Pdlim1O70400 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pdlim1O70400 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pdlim1O70400 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pdlim1O70400 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pdlim1O70400 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Pdlim1O70400 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pdlim1O70400 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pdlim1O70400 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Pdlim1O70400 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Pdlim1O70400 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pdlim1O70400 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pdlim1O70400 Particl-201ENSMUST00000205370 1560 ntBASIC23.36■■□□□ 1.33
Pdlim1O70400 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC23.34■■□□□ 1.33
Pdlim1O70400 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Pdlim1O70400 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Pdlim1O70400 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pdlim1O70400 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Pdlim1O70400 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Pdlim1O70400 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC23.32■■□□□ 1.32
Pdlim1O70400 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Pdlim1O70400 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Pdlim1O70400 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Pdlim1O70400 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Pdlim1O70400 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
Pdlim1O70400 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC23.31■■□□□ 1.32
Pdlim1O70400 Gm7432-201ENSMUST00000210343 879 ntBASIC23.31■■□□□ 1.32
Pdlim1O70400 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC23.3■■□□□ 1.32
Pdlim1O70400 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pdlim1O70400 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC23.29■■□□□ 1.32
Pdlim1O70400 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pdlim1O70400 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pdlim1O70400 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Pdlim1O70400 AC131739.1-201ENSMUST00000221692 1245 ntBASIC23.28■■□□□ 1.32
Pdlim1O70400 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pdlim1O70400 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pdlim1O70400 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC23.27■■□□□ 1.32
Pdlim1O70400 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
Pdlim1O70400 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pdlim1O70400 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Pdlim1O70400 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.25■■□□□ 1.31
Pdlim1O70400 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.25■■□□□ 1.31
Pdlim1O70400 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Pdlim1O70400 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Pdlim1O70400 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Pdlim1O70400 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Pdlim1O70400 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pdlim1O70400 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pdlim1O70400 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC23.23■■□□□ 1.31
Pdlim1O70400 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Pdlim1O70400 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
Pdlim1O70400 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC23.23■■□□□ 1.31
Pdlim1O70400 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Pdlim1O70400 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pdlim1O70400 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pdlim1O70400 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pdlim1O70400 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
Pdlim1O70400 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pdlim1O70400 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pdlim1O70400 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pdlim1O70400 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pdlim1O70400 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pdlim1O70400 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pdlim1O70400 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Pdlim1O70400 Gm37136-201ENSMUST00000194368 194 ntBASIC23.2■■□□□ 1.3
Pdlim1O70400 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Pdlim1O70400 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pdlim1O70400 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Pdlim1O70400 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pdlim1O70400 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Pdlim1O70400 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Pdlim1O70400 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pdlim1O70400 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pdlim1O70400 Gm11599-201ENSMUST00000118720 878 ntBASIC23.17■■□□□ 1.3
Pdlim1O70400 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pdlim1O70400 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pdlim1O70400 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pdlim1O70400 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pdlim1O70400 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Pdlim1O70400 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Pdlim1O70400 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Pdlim1O70400 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Pdlim1O70400 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Pdlim1O70400 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pdlim1O70400 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Pdlim1O70400 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Pdlim1O70400 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pdlim1O70400 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC23.1■■□□□ 1.29
Pdlim1O70400 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pdlim1O70400 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.1■■□□□ 1.29
Pdlim1O70400 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC23.09■■□□□ 1.29
Pdlim1O70400 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Pdlim1O70400 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Pdlim1O70400 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pdlim1O70400 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pdlim1O70400 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.06■■□□□ 1.28
Pdlim1O70400 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms