Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv16A0A0B4J1H3 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv16A0A0B4J1H3 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC17.04■□□□□ 0.32
Trbv16A0A0B4J1H3 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv16A0A0B4J1H3 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv16A0A0B4J1H3 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv16A0A0B4J1H3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv16A0A0B4J1H3 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Trbv16A0A0B4J1H3 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv16A0A0B4J1H3 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trbv16A0A0B4J1H3 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trbv16A0A0B4J1H3 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trbv16A0A0B4J1H3 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv16A0A0B4J1H3 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trbv16A0A0B4J1H3 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv16A0A0B4J1H3 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv16A0A0B4J1H3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trbv16A0A0B4J1H3 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv16A0A0B4J1H3 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv16A0A0B4J1H3 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Trbv16A0A0B4J1H3 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
Trbv16A0A0B4J1H3 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC16.99■□□□□ 0.31
Trbv16A0A0B4J1H3 Zfp131-205ENSMUST00000223812 663 ntBASIC16.98■□□□□ 0.31
Trbv16A0A0B4J1H3 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv16A0A0B4J1H3 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv16A0A0B4J1H3 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv16A0A0B4J1H3 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv16A0A0B4J1H3 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv16A0A0B4J1H3 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Trbv16A0A0B4J1H3 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trbv16A0A0B4J1H3 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
Trbv16A0A0B4J1H3 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trbv16A0A0B4J1H3 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC16.96■□□□□ 0.3
Trbv16A0A0B4J1H3 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trbv16A0A0B4J1H3 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC16.96■□□□□ 0.3
Trbv16A0A0B4J1H3 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trbv16A0A0B4J1H3 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trbv16A0A0B4J1H3 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trbv16A0A0B4J1H3 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC16.95■□□□□ 0.3
Trbv16A0A0B4J1H3 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Trbv16A0A0B4J1H3 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trbv16A0A0B4J1H3 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC16.94■□□□□ 0.3
Trbv16A0A0B4J1H3 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Trbv16A0A0B4J1H3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trbv16A0A0B4J1H3 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trbv16A0A0B4J1H3 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trbv16A0A0B4J1H3 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trbv16A0A0B4J1H3 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trbv16A0A0B4J1H3 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trbv16A0A0B4J1H3 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trbv16A0A0B4J1H3 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC16.93■□□□□ 0.3
Trbv16A0A0B4J1H3 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 Gm24970-201ENSMUST00000175582 82 ntBASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trbv16A0A0B4J1H3 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 Particl-201ENSMUST00000205370 1560 ntBASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC16.91■□□□□ 0.3
Trbv16A0A0B4J1H3 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trbv16A0A0B4J1H3 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trbv16A0A0B4J1H3 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trbv16A0A0B4J1H3 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.3
Trbv16A0A0B4J1H3 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trbv16A0A0B4J1H3 Gm37847-201ENSMUST00000192163 1497 ntBASIC16.89■□□□□ 0.29
Trbv16A0A0B4J1H3 Gm31748-201ENSMUST00000194938 1497 ntBASIC16.89■□□□□ 0.29
Trbv16A0A0B4J1H3 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trbv16A0A0B4J1H3 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Trbv16A0A0B4J1H3 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trbv16A0A0B4J1H3 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trbv16A0A0B4J1H3 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC16.88■□□□□ 0.29
Trbv16A0A0B4J1H3 Gm9397-201ENSMUST00000200125 605 ntBASIC16.88■□□□□ 0.29
Trbv16A0A0B4J1H3 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trbv16A0A0B4J1H3 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trbv16A0A0B4J1H3 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trbv16A0A0B4J1H3 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Trbv16A0A0B4J1H3 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC16.86■□□□□ 0.29
Trbv16A0A0B4J1H3 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trbv16A0A0B4J1H3 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Trbv16A0A0B4J1H3 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trbv16A0A0B4J1H3 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trbv16A0A0B4J1H3 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trbv16A0A0B4J1H3 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
Trbv16A0A0B4J1H3 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trbv16A0A0B4J1H3 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC16.85■□□□□ 0.29
Trbv16A0A0B4J1H3 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv16A0A0B4J1H3 Gm30023-201ENSMUST00000197970 889 ntBASIC16.84■□□□□ 0.29
Trbv16A0A0B4J1H3 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC16.84■□□□□ 0.29
Trbv16A0A0B4J1H3 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv16A0A0B4J1H3 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms