Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm37998-201ENSMUST00000195699 166 ntTSL 5 BASIC1.33□□□□□ -2.2
Ushbp1Q8R370 Gm45741-201ENSMUST00000212661 152 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
Ushbp1Q8R370 Gm25851-201ENSMUST00000082794 107 ntBASIC1.33□□□□□ -2.2
Ushbp1Q8R370 Snord80-201ENSMUST00000083801 81 ntBASIC1.33□□□□□ -2.2
Ushbp1Q8R370 Gm25110-201ENSMUST00000116684 121 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Gm25775-201ENSMUST00000116716 121 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Gm24795-201ENSMUST00000116737 121 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Gm25171-201ENSMUST00000116926 121 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Gm22845-201ENSMUST00000157712 104 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Gm22503-201ENSMUST00000158983 115 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Mir7663-201ENSMUST00000183950 61 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Mir7091-201ENSMUST00000184075 79 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Gm22980-201ENSMUST00000082608 70 ntBASIC1.32□□□□□ -2.2
Ushbp1Q8R370 Gm25416-201ENSMUST00000104221 107 ntBASIC1.31□□□□□ -2.2
Ushbp1Q8R370 Gm22340-201ENSMUST00000157717 114 ntBASIC1.31□□□□□ -2.2
Ushbp1Q8R370 Gm25370-201ENSMUST00000158159 94 ntBASIC1.31□□□□□ -2.2
Ushbp1Q8R370 Gm23065-201ENSMUST00000158236 130 ntBASIC1.31□□□□□ -2.2
Ushbp1Q8R370 Gm22515-201ENSMUST00000158273 305 ntBASIC1.31□□□□□ -2.2
Ushbp1Q8R370 Gm22089-201ENSMUST00000158336 102 ntBASIC1.31□□□□□ -2.2
Ushbp1Q8R370 Gm42891-201ENSMUST00000199340 281 ntTSL 5 BASIC1.31□□□□□ -2.2
Ushbp1Q8R370 Gm26253-201ENSMUST00000122493 103 ntBASIC1.29□□□□□ -2.2
Ushbp1Q8R370 Gm24650-201ENSMUST00000157105 103 ntBASIC1.29□□□□□ -2.2
Ushbp1Q8R370 Gm22074-201ENSMUST00000158595 113 ntBASIC1.29□□□□□ -2.2
Ushbp1Q8R370 Mir6390-201ENSMUST00000184405 129 ntBASIC1.29□□□□□ -2.2
Ushbp1Q8R370 Zfp654-201ENSMUST00000052588 4741 ntAPPRIS P3 TSL 1 (best) BASIC1.29□□□□□ -2.2
Ushbp1Q8R370 Gm26089-201ENSMUST00000157898 107 ntBASIC1.28□□□□□ -2.2
Ushbp1Q8R370 Gm25901-201ENSMUST00000158494 130 ntBASIC1.28□□□□□ -2.2
Ushbp1Q8R370 Snord60-201ENSMUST00000082834 78 ntBASIC1.28□□□□□ -2.2
Ushbp1Q8R370 Mir1a-1-201ENSMUST00000093635 77 ntBASIC1.28□□□□□ -2.2
Ushbp1Q8R370 Arhgap5-204ENSMUST00000219443 9323 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
Ushbp1Q8R370 Fam46d-201ENSMUST00000101292 2995 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
Ushbp1Q8R370 Gm23881-201ENSMUST00000116872 66 ntBASIC1.27□□□□□ -2.21
Ushbp1Q8R370 Gm25166-201ENSMUST00000158909 111 ntBASIC1.27□□□□□ -2.21
Ushbp1Q8R370 Gm23244-201ENSMUST00000083375 92 ntBASIC1.27□□□□□ -2.21
Ushbp1Q8R370 Zfp813-ps-201ENSMUST00000186652 2506 ntBASIC1.27□□□□□ -2.21
Ushbp1Q8R370 Traj13-201ENSMUST00000103728 57 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
Ushbp1Q8R370 Gm25506-201ENSMUST00000104339 70 ntBASIC1.26□□□□□ -2.21
Ushbp1Q8R370 Gm25393-201ENSMUST00000157336 285 ntBASIC1.26□□□□□ -2.21
Ushbp1Q8R370 Gm26363-201ENSMUST00000158866 83 ntBASIC1.26□□□□□ -2.21
Ushbp1Q8R370 Gm24311-201ENSMUST00000082570 104 ntBASIC1.26□□□□□ -2.21
Ushbp1Q8R370 Mir219a-2-201ENSMUST00000083551 97 ntBASIC1.26□□□□□ -2.21
Ushbp1Q8R370 Gm12469-201ENSMUST00000117623 207 ntBASIC1.25□□□□□ -2.21
Ushbp1Q8R370 Trgj4-201ENSMUST00000184430 61 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
Ushbp1Q8R370 Traj49-202ENSMUST00000199452 62 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
Ushbp1Q8R370 Sycp1-ps1-201ENSMUST00000207882 2768 ntBASIC1.24□□□□□ -2.21
Ushbp1Q8R370 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC1.24□□□□□ -2.21
Ushbp1Q8R370 Gm22706-201ENSMUST00000157907 112 ntBASIC1.24□□□□□ -2.21
Ushbp1Q8R370 Gm27419-201ENSMUST00000184576 109 ntBASIC1.24□□□□□ -2.21
Ushbp1Q8R370 Gm25899-201ENSMUST00000082672 141 ntBASIC1.24□□□□□ -2.21
Ushbp1Q8R370 Gm22753-201ENSMUST00000083657 107 ntBASIC1.24□□□□□ -2.21
Ushbp1Q8R370 Traj45-201ENSMUST00000103697 63 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
Ushbp1Q8R370 Gm26274-201ENSMUST00000157103 321 ntBASIC1.23□□□□□ -2.21
Ushbp1Q8R370 Gm24476-201ENSMUST00000157437 131 ntBASIC1.23□□□□□ -2.21
Ushbp1Q8R370 Mir1933-201ENSMUST00000158930 88 ntBASIC1.23□□□□□ -2.21
Ushbp1Q8R370 Gm44488-201ENSMUST00000199467 119 ntBASIC1.23□□□□□ -2.21
Ushbp1Q8R370 Gm26109-201ENSMUST00000083970 70 ntBASIC1.23□□□□□ -2.21
Ushbp1Q8R370 Gm14884-201ENSMUST00000120456 196 ntBASIC1.22□□□□□ -2.21
Ushbp1Q8R370 Gm23893-201ENSMUST00000158106 134 ntBASIC1.22□□□□□ -2.21
Ushbp1Q8R370 Gm24547-201ENSMUST00000158649 149 ntBASIC1.22□□□□□ -2.21
Ushbp1Q8R370 BC050972-201ENSMUST00000168475 526 ntTSL 3 BASIC1.22□□□□□ -2.21
Ushbp1Q8R370 Gm42533-201ENSMUST00000196247 157 ntBASIC1.22□□□□□ -2.21
Ushbp1Q8R370 Gm43944-201ENSMUST00000205220 120 ntBASIC1.22□□□□□ -2.21
Ushbp1Q8R370 Gm24099-201ENSMUST00000083384 107 ntBASIC1.22□□□□□ -2.21
Ushbp1Q8R370 Gm10974-201ENSMUST00000107486 126 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
Ushbp1Q8R370 Gm36956-201ENSMUST00000193830 214 ntBASIC1.21□□□□□ -2.22
Ushbp1Q8R370 Gm44602-201ENSMUST00000205948 132 ntBASIC1.21□□□□□ -2.22
Ushbp1Q8R370 Gm24579-201ENSMUST00000103964 144 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 Gm16265-201ENSMUST00000134558 108 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 Gm23857-201ENSMUST00000158379 111 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 Gm25618-201ENSMUST00000179484 107 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 Mir6381-201ENSMUST00000183426 87 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 Gm44469-201ENSMUST00000198558 79 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 AC140930.2-201ENSMUST00000221803 109 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 AC160550.1-201ENSMUST00000228659 181 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 Gm25337-201ENSMUST00000083723 104 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 Gm23344-201ENSMUST00000083818 68 ntBASIC1.2□□□□□ -2.22
Ushbp1Q8R370 Gm23126-201ENSMUST00000104260 134 ntBASIC1.19□□□□□ -2.22
Ushbp1Q8R370 Gm11694-201ENSMUST00000118637 159 ntBASIC1.19□□□□□ -2.22
Ushbp1Q8R370 Gm10548-202ENSMUST00000165672 272 ntBASIC1.19□□□□□ -2.22
Ushbp1Q8R370 Gm26062-201ENSMUST00000083379 107 ntBASIC1.19□□□□□ -2.22
Ushbp1Q8R370 Mir1904-201ENSMUST00000122702 80 ntBASIC1.18□□□□□ -2.22
Ushbp1Q8R370 Gm25968-201ENSMUST00000157167 100 ntBASIC1.18□□□□□ -2.22
Ushbp1Q8R370 Gm22770-201ENSMUST00000158368 67 ntBASIC1.18□□□□□ -2.22
Ushbp1Q8R370 Gm23008-201ENSMUST00000158946 80 ntBASIC1.18□□□□□ -2.22
Ushbp1Q8R370 Mir3083-201ENSMUST00000175377 64 ntBASIC1.18□□□□□ -2.22
Ushbp1Q8R370 Gm45197-201ENSMUST00000205288 151 ntBASIC1.18□□□□□ -2.22
Ushbp1Q8R370 AC166341.8-201ENSMUST00000221267 108 ntBASIC1.18□□□□□ -2.22
Ushbp1Q8R370 Gm25247-201ENSMUST00000175475 90 ntBASIC1.17□□□□□ -2.22
Ushbp1Q8R370 Gm27993-201ENSMUST00000184362 85 ntBASIC1.17□□□□□ -2.22
Ushbp1Q8R370 Gm25629-201ENSMUST00000084001 107 ntBASIC1.17□□□□□ -2.22
Ushbp1Q8R370 Gm14400-201ENSMUST00000117234 2135 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 Gm23482-201ENSMUST00000104172 122 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 Gm24555-201ENSMUST00000104548 124 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 Gm25289-201ENSMUST00000122799 119 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 Gm26158-201ENSMUST00000158973 119 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 AC132833.2-201ENSMUST00000228699 157 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 mt-Tc-201ENSMUST00000082400 66 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 Gm25635-201ENSMUST00000082675 131 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 Mir30a-201ENSMUST00000083471 71 ntBASIC1.16□□□□□ -2.22
Ushbp1Q8R370 Mir27b-201ENSMUST00000083541 73 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 76,532 protein–RNA pairs in 169.9 ms