Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm14400-201ENSMUST00000117234 2135 ntBASIC2.56□□□□□ -2
Limch1Q3UH68 Gm11856-201ENSMUST00000118712 276 ntBASIC2.56□□□□□ -2
Limch1Q3UH68 Gm24947-201ENSMUST00000158334 110 ntBASIC2.56□□□□□ -2
Limch1Q3UH68 BC050972-201ENSMUST00000168475 526 ntTSL 3 BASIC2.56□□□□□ -2
Limch1Q3UH68 Gm20477-201ENSMUST00000174028 280 ntBASIC2.56□□□□□ -2
Limch1Q3UH68 Mir3471-1-201ENSMUST00000175139 131 ntBASIC2.56□□□□□ -2
Limch1Q3UH68 AC163289.1-201ENSMUST00000215919 262 ntBASIC2.56□□□□□ -2
Limch1Q3UH68 AC134601.3-201ENSMUST00000221682 154 ntBASIC2.56□□□□□ -2
Limch1Q3UH68 Gm25788-201ENSMUST00000082721 131 ntBASIC2.56□□□□□ -2
Limch1Q3UH68 Gm10203-201ENSMUST00000087348 198 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
Limch1Q3UH68 Gm23950-201ENSMUST00000104026 129 ntBASIC2.55□□□□□ -2
Limch1Q3UH68 Gm26077-201ENSMUST00000104064 123 ntBASIC2.55□□□□□ -2
Limch1Q3UH68 Gm26104-201ENSMUST00000157250 108 ntBASIC2.55□□□□□ -2
Limch1Q3UH68 Gm22803-201ENSMUST00000158049 283 ntBASIC2.55□□□□□ -2
Limch1Q3UH68 Gm10730-201ENSMUST00000194097 2723 ntBASIC2.55□□□□□ -2
Limch1Q3UH68 Gm3724-201ENSMUST00000197957 349 ntBASIC2.55□□□□□ -2
Limch1Q3UH68 n-R5s197-201ENSMUST00000083302 119 ntBASIC2.55□□□□□ -2
Limch1Q3UH68 Zfp160-201ENSMUST00000088811 3791 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
Limch1Q3UH68 Gm44133-202ENSMUST00000204450 2586 ntBASIC2.55□□□□□ -2
Limch1Q3UH68 Gm37895-201ENSMUST00000192448 4550 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Gm13219-201ENSMUST00000144870 3019 ntTSL 1 (best) BASIC2.54□□□□□ -2
Limch1Q3UH68 Gm26154-201ENSMUST00000102339 96 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Gm14674-201ENSMUST00000117816 342 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Gm23996-201ENSMUST00000158062 131 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Gm22093-201ENSMUST00000158980 111 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Gm16306-201ENSMUST00000160568 176 ntTSL 3 BASIC2.54□□□□□ -2
Limch1Q3UH68 Hmga1b-202ENSMUST00000178955 120 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Mir6905-201ENSMUST00000184228 70 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Mir3569-201ENSMUST00000185080 58 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Gm43512-201ENSMUST00000198495 176 ntBASIC2.54□□□□□ -2
Limch1Q3UH68 Ppp1r3a-201ENSMUST00000045096 6965 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
Limch1Q3UH68 Gm23817-201ENSMUST00000158449 104 ntBASIC2.53□□□□□ -2
Limch1Q3UH68 Gm25796-201ENSMUST00000082645 163 ntBASIC2.53□□□□□ -2
Limch1Q3UH68 Snora3-201ENSMUST00000083082 132 ntBASIC2.53□□□□□ -2
Limch1Q3UH68 Mir222-201ENSMUST00000083537 79 ntBASIC2.53□□□□□ -2
Limch1Q3UH68 Mir451a-201ENSMUST00000093557 72 ntBASIC2.53□□□□□ -2
Limch1Q3UH68 Gm18795-202ENSMUST00000223373 2920 ntBASIC2.52□□□□□ -2.01
Limch1Q3UH68 Snhg14-213ENSMUST00000190666 3708 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
Limch1Q3UH68 Gm25887-201ENSMUST00000157777 84 ntBASIC2.52□□□□□ -2.01
Limch1Q3UH68 Traj61-201ENSMUST00000165025 72 ntBASIC2.52□□□□□ -2.01
Limch1Q3UH68 Mir3086-201ENSMUST00000175072 87 ntBASIC2.52□□□□□ -2.01
Limch1Q3UH68 Mir7026-201ENSMUST00000184384 67 ntBASIC2.52□□□□□ -2.01
Limch1Q3UH68 Gm24099-201ENSMUST00000083384 107 ntBASIC2.52□□□□□ -2.01
Limch1Q3UH68 Traj39-201ENSMUST00000103703 63 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
Limch1Q3UH68 Fau-ps1-201ENSMUST00000119675 252 ntBASIC2.51□□□□□ -2.01
Limch1Q3UH68 Gm25289-201ENSMUST00000122799 119 ntBASIC2.51□□□□□ -2.01
Limch1Q3UH68 Mir300-201ENSMUST00000083485 79 ntBASIC2.51□□□□□ -2.01
Limch1Q3UH68 Trdn-201ENSMUST00000095762 4514 ntAPPRIS P2 TSL 5 BASIC2.5□□□□□ -2.01
Limch1Q3UH68 Gm24649-201ENSMUST00000157106 134 ntBASIC2.5□□□□□ -2.01
Limch1Q3UH68 Gm22815-201ENSMUST00000157451 62 ntBASIC2.5□□□□□ -2.01
Limch1Q3UH68 Gm22159-201ENSMUST00000158412 130 ntBASIC2.5□□□□□ -2.01
Limch1Q3UH68 Tlr8-202ENSMUST00000112170 3431 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
Limch1Q3UH68 F8-202ENSMUST00000114085 7295 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
Limch1Q3UH68 Gm25610-201ENSMUST00000104016 129 ntBASIC2.49□□□□□ -2.01
Limch1Q3UH68 Gm26051-201ENSMUST00000104642 93 ntBASIC2.49□□□□□ -2.01
Limch1Q3UH68 Gm23652-201ENSMUST00000116752 107 ntBASIC2.49□□□□□ -2.01
Limch1Q3UH68 Gm27979-201ENSMUST00000185126 56 ntBASIC2.49□□□□□ -2.01
Limch1Q3UH68 Olfr1421-ps1-201ENSMUST00000208900 208 ntBASIC2.49□□□□□ -2.01
Limch1Q3UH68 Gm45471-201ENSMUST00000211270 281 ntBASIC2.49□□□□□ -2.01
Limch1Q3UH68 CT571266.1-201ENSMUST00000222859 153 ntBASIC2.49□□□□□ -2.01
Limch1Q3UH68 Snora69-201ENSMUST00000083708 131 ntBASIC2.49□□□□□ -2.01
Limch1Q3UH68 Gm14588-201ENSMUST00000119895 172 ntBASIC2.48□□□□□ -2.01
Limch1Q3UH68 Gm26213-201ENSMUST00000158582 110 ntBASIC2.48□□□□□ -2.01
Limch1Q3UH68 Gm24177-201ENSMUST00000158927 131 ntBASIC2.48□□□□□ -2.01
Limch1Q3UH68 Mir7017-201ENSMUST00000184894 62 ntBASIC2.48□□□□□ -2.01
Limch1Q3UH68 Hspe1-ps2-201ENSMUST00000051437 312 ntBASIC2.48□□□□□ -2.01
Limch1Q3UH68 Gm22319-201ENSMUST00000157147 122 ntBASIC2.47□□□□□ -2.01
Limch1Q3UH68 Gm23670-201ENSMUST00000157469 119 ntBASIC2.47□□□□□ -2.01
Limch1Q3UH68 Gm23384-201ENSMUST00000158593 103 ntBASIC2.47□□□□□ -2.01
Limch1Q3UH68 Gm25750-201ENSMUST00000175483 112 ntBASIC2.47□□□□□ -2.01
Limch1Q3UH68 Snord43-201ENSMUST00000199549 108 ntBASIC2.47□□□□□ -2.01
Limch1Q3UH68 Gm25851-201ENSMUST00000082794 107 ntBASIC2.47□□□□□ -2.01
Limch1Q3UH68 Olfr868-202ENSMUST00000212999 4233 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
Limch1Q3UH68 Gm25611-201ENSMUST00000104017 133 ntBASIC2.46□□□□□ -2.02
Limch1Q3UH68 Gm6444-201ENSMUST00000119611 458 ntBASIC2.46□□□□□ -2.02
Limch1Q3UH68 Gm26253-201ENSMUST00000122493 103 ntBASIC2.46□□□□□ -2.02
Limch1Q3UH68 n-R5s159-201ENSMUST00000122681 120 ntBASIC2.46□□□□□ -2.02
Limch1Q3UH68 Gm25241-201ENSMUST00000174909 84 ntBASIC2.46□□□□□ -2.02
Limch1Q3UH68 Gm26217-201ENSMUST00000175212 84 ntBASIC2.46□□□□□ -2.02
Limch1Q3UH68 Gm42795-201ENSMUST00000198847 76 ntBASIC2.46□□□□□ -2.02
Limch1Q3UH68 Gm44734-201ENSMUST00000206025 237 ntTSL 5 BASIC2.46□□□□□ -2.02
Limch1Q3UH68 Gm12869-201ENSMUST00000156265 344 ntTSL 2 BASIC2.45□□□□□ -2.02
Limch1Q3UH68 Gm26466-201ENSMUST00000179615 79 ntBASIC2.45□□□□□ -2.02
Limch1Q3UH68 Gm43206-201ENSMUST00000197990 114 ntBASIC2.45□□□□□ -2.02
Limch1Q3UH68 Gm44807-201ENSMUST00000206115 154 ntBASIC2.45□□□□□ -2.02
Limch1Q3UH68 Gm26123-201ENSMUST00000083363 135 ntBASIC2.45□□□□□ -2.02
Limch1Q3UH68 Olfr868-201ENSMUST00000212767 4196 ntAPPRIS P1 TSL 3 BASIC2.45□□□□□ -2.02
Limch1Q3UH68 Olfr867-202ENSMUST00000212098 4228 ntTSL 3 BASIC2.44□□□□□ -2.02
Limch1Q3UH68 Gm16328-201ENSMUST00000126985 196 ntBASIC2.44□□□□□ -2.02
Limch1Q3UH68 Zfp969-202ENSMUST00000131041 252 ntTSL 2 BASIC2.44□□□□□ -2.02
Limch1Q3UH68 Gm23601-201ENSMUST00000157259 131 ntBASIC2.44□□□□□ -2.02
Limch1Q3UH68 Gm24237-201ENSMUST00000157790 132 ntBASIC2.44□□□□□ -2.02
Limch1Q3UH68 Gm22963-201ENSMUST00000157960 91 ntBASIC2.44□□□□□ -2.02
Limch1Q3UH68 Gm22884-201ENSMUST00000083127 140 ntBASIC2.44□□□□□ -2.02
Limch1Q3UH68 Gm23986-201ENSMUST00000157144 63 ntBASIC2.43□□□□□ -2.02
Limch1Q3UH68 Gm24524-201ENSMUST00000082925 170 ntBASIC2.43□□□□□ -2.02
Limch1Q3UH68 Mir151-201ENSMUST00000083678 68 ntBASIC2.43□□□□□ -2.02
Limch1Q3UH68 Gpr174-207ENSMUST00000178838 4955 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
Limch1Q3UH68 Gm25680-201ENSMUST00000116917 126 ntBASIC2.42□□□□□ -2.02
Limch1Q3UH68 Gm22635-201ENSMUST00000116962 126 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 76,532 protein–RNA pairs in 140 ms